BAC Information

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BAC

Clone NameMSMg01-095N22
Chromosome2 (Build37)
Map Location 171,862,443 - 171,862,750
singlet/doubletsinglet
Overlap geneCbln4
Upstream geneLOC100043743, LOC100043744
Downstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095N22.T7 (MSMg01no095_n22.b1)MSMg01-095N22.TJ (MSMg01no095_n22.g1)
ACCAG312682AG312683
length6331,012
length of high quality
(start - end)
308 (12 - 319)---
definitionCHROMAT_FILE: MSMg01no095_n22.b1 PHD_FILE: MSMg01no095_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:01 2005CHROMAT_FILE: MSMg01no095_n22.g1 PHD_FILE: MSMg01no095_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGATCCGCGGAATTCTAGACCTGTCTCGACAGACACAAAGTTTCACAGA
TCATTTTCGTGTGTGTGCCAGTTTCCTTATATGCGCACCGGGACTCTAAA
GCTGAAAAATCCCCGATCTGCTTACATGTTAACTGTCAGAAGCCGTCTCA
AGGTTTGTCCTGTTTAGTTTCCTGCTGTTACAGCATTGGCTGCAGATGTG
GGGTTTTTTTATTTCTTTGTTTTTGAAAGACAGGCTAATGGGTCTGAAAG
TTAGAAAACTTGGAAGTTCTGACTTCAGTGGTTATAGTGTAACTGCCAAA
GACATGTATACACGTGTGGATACTTTGTATTACCACCCCCCCCTTTTAAA
CAAATTATAATTACCTTTTGAATTTGCTCGCCCTGTTCACCTAAAAGAAA
CTGGGGCTGGAATTTTAATGGACTGGCAATTGTGGTTTTCTTCTCCCCTT
TAAAGCAAAAAATTGTCTTTGCCTCCCAAAAGGCCCCCTTAAAATTCCTA
AAAAATTTCACCCCCCATTTATTATATTACCTTCTTTTTCTCCCTTTTCC
TTTAATTTTCTTTTTACGACGTCCTTATCTTATCACCCTTCTAATTTATA
ACCACTACATACCTCCACACACCCCAATTTTTA
TTGGTTTTTTTTTTTTTTTTTTTNCTTCTTTCTCCTCCTTTNTNNNNNNN
NTTTTATCTTTTTTCGTTTCTGGGANCTCTTGGAANNNNTCTCTAAGAAA
AANNNNTCCGCTCTTCCCAAAGAAATTTCGGGGAGNNNTTTCCCCTTTCC
TCACAAAAAGAGGGGGGGGGGGGGGNNNNNNNTTTTTTTTTGTTCAAANA
GAAAATTTTTTTTCCCCCCAACAAAAAGGAGGGAGGATTTTTTTTTTGTT
TTTAATTTATTTTAGGGTTGTTGAGGTGTTTTTAGTTATAATANTTTATT
TTTTTTTTTTTTTCCCCCCCCCTCCCTCTCAAAAAAAAAAGGGGGGGGCG
TCCTTAGTTAAAAATATATTGATTTTCTTCTCTGTTCTCAAGCACATTAT
TTCACCATTACACTTTCCTCTCCCCTACCCCATCTATTCTACCCCCTCCC
CGCAACATAATTATTCTTTTTTCCCCCCCCTCAACCACTCACATCATCTC
TAAAAAAAAAATTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCCGGTCGT
TTCGTTATTCCCTTTGGTTTCGTCCCGTTTCTCCCCCCCCCCCATAAAAA
AAAAAAAATATATCTCGGGGGGGGGGGGGGGCCTCCTCACCTTTCTCCCC
CCCTTCTCACTCACTCTCTATTTTCCCTTTTCCCCCCTGTTTTCCACCCT
CTTCGTCCCCTTTCTTCTCCCTCTTTTATCCCCCCCCTCCCTTTCTTCTC
CCTCCTCCGCCCTCCTATATTTTTAATATTCCTCCCTCCCTTCACCCCCC
CGCTTCCCTCCCTCGTTTTCTTTTTTCTCTCCTTCCCCCTCCTCACTTCT
ATTTTTTTCCCTCTCTCCCTTTTATTCATATACCCCTCTCTTCCTCGCCG
CGCCCGTAACTTCTCCCCACTTCTTTTTATTTTCTCGATTTATATTTACT
ACTCGCTTCCCAATTGTGTCTATCTCTTTCTTCGCCTACTTTCTTCCCCC
TTTCTTCGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_n22.b1 MSMg01no095_n22.b1 CHROMAT_FILE:
MSMg01no095_n22.b1 PHD_FILE: MSMg01no095_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:01 2005
         (308 letters)



>mm_chr2_171862243_171862950
          Length = 708

 Score =  549 bits (284), Expect = e-161
 Identities = 302/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctagacctgtctcgacagacacaaagtttcacagatcattttcgtgtgtgtgccag 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aattctagacctgtctggacagacacaaagtttcacagatcattttcgtgtgtgtgccag 449

                                                                       
Query: 61  tttccttatatgcgcaccgggactctaaagctgaaaaatccccgatctgcttacatgtta 120
           |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttccttatatgtggactgggactctaaagctgaaaaatccccgatctgcttacatgtta 389

                                                                       
Query: 121 actgtcagaagccgtctcaaggtttgtcctgtttagtttcctgctgttacagcattggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actgtcagaagccgtctcaaggtttgtcctgtttagtttcctgctgttacagcattggct 329

                                                                       
Query: 181 gcagatgtggggtttttttatttctttgtttttgaaagacaggctaatgggtctgaaagt 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcagatgtgggttttttttatttctttgtttttgaaagacaggctaatgggtctgaaagt 269

                                                                       
Query: 241 tagaaaacttggaagttctgacttcagtggttatagtgtaactgccaaagacatgtatac 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 268 tagaaaacttggaagttctgacttcagtggttatagtggaactgccaaagacatgtatac 209

                   
Query: 301 acgtgtgg 308
           ||||||||
Sbjct: 208 acgtgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)