BAC Information

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BAC

Clone NameMSMg01-096C05
Chromosome2 (Build37)
Map Location 95,212,712 - 95,212,958
singlet/doubletsinglet
Overlap genenone
Upstream geneTtc17, Itpa-ps1, Api5, LOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096C05.T7 (MSMg01no096_c05.b1)MSMg01-096C05.TJ (MSMg01no096_c05.g1)
ACCAG312886AG312887
length730740
length of high quality
(start - end)
256 (65 - 320)379 (66 - 444)
definitionCHROMAT_FILE: MSMg01no096_c05.b1 PHD_FILE: MSMg01no096_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:23 2005CHROMAT_FILE: MSMg01no096_c05.g1 PHD_FILE: MSMg01no096_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAAGGCGCGGAATTCA
TTCACTATACCTCTGAACTTACTACCTATACACTTCCCATTAAGCCCCAC
CCTCAATATTGATGTACTCCATATTAATTTCTAATGGGAATTCTCAGACC
ACTGCTAAATACTTAAGGTCTATGTAGACTCAACTCCTGCTTATCACAGT
CTACTTAGCTCCCCAAAGTTACCTTGGAAATTCAGTGAAAACTTTATAAA
CTATATACTGAAAGGAGTGAATTGGCCTGAGCCAGGCTGTACTCCATGAC
AGGCTGCAAACTGTTTATGTATACCAGGCATGAGTTTCTACTTCTCAGAA
CTGGTCAAGTCAGTTACTCGAACAACCACAGACATATGTCAAAAGGTGAC
CCTCCCCAGCTTGTGAAAAGACAGCTAGCCAAACTTGCAGCCAAGAAGTC
AAGAGCTAACCTCCCTTAGCATGAAGCAAGAATAGTTAGTGTGAATCATA
GTGTCACTTAGATCCCAGAGATAGAACCCACTACTCAAGATATAGATCAC
CTATCCCTCCCTAATGTTCTTTTTAGCTTTAGGACTGAGTCTGAAAATTC
AGTCAAGATCGTTCCATCCTAATGTAATTGGGCCCCTGCCTGCAAAAATA
AATTTCTCTTTGCTTTTGCATACTATTTGAGTCTGGCGTACATTCTTCAA
CAATTTACAGACCCCAACTTTGCATAATGA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTCCGCTTGTATTTTCTTTATTGCTTCTGTCTCC
ACTTATTGGACTCCCACAGTTCTATTTATTTTCTTCACCTGTTTAATTGT
ATTTTTCTGTATATCTTTAAAGATTTGTTTGTTTCTTCTTTAAAGACCCC
CAACTCTTTGATTGTATTTTCCTGTATTTCTTAAAAGAATTTATTCATTT
CTTCTTTAAAGACCTCTATCATTATTATAAGATTGGATTTAAGGTCATTT
TTCTTGTTCTTTGAGTTTGTAAGGATATCCAAGGTAGCTGTGGCCTGAAG
ATGTCATTTTGCCCTGGCTTTTGTTACTTGTGTTCTTTCAAGGACCTTTA
GCCATCTGGATGGCTTCACTCTCTGGATGTTTCTGTTGTAATAGCTTTTG
CGAGGAGGGTTAACCTGGATGGTCCTGGCATGGCAGGCCTCTGATGTGTA
TCCTTGGGGTGTATGGCTCTAGATCTGCAGATGTGTGTGTTTCAGATGCA
GCATATTTGAAGAAGACCGAGAGGTGGTATATAATGGAGGTCTCTCCTGT
ACCACTAGTTTGCCCTGAGCAGCTAGGTTTGCTCCAGAGGATCTGTTTAG
CTAATAAGATCCTTGTATCATCGAAAGTTTTATCTATATTTTTTCATGAA
CATCCCGCCCTGATGAACTCTTCACAACAAGTCGTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_c05.b1 MSMg01no096_c05.b1 CHROMAT_FILE:
MSMg01no096_c05.b1 PHD_FILE: MSMg01no096_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:23 2005
         (256 letters)



>mm_chr2_95212512_95213166
          Length = 655

 Score =  426 bits (220), Expect = e-124
 Identities = 241/248 (97%), Gaps = 1/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacttactacctatacacttcccattaagccccaccctcaatattgatgtactccatat 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||
Sbjct: 201 gaacttactacctatacacttcccattacgccccaccctcaatattgatgtactggatat 260

                                                                       
Query: 61  taatttctaatgggaattctcagaccactgctaaatacttaaggtctatgtagactcaac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 taatttctaatgggaattctcagaccactgctaaatacttaagggctatgtagactcaac 320

                                                                       
Query: 121 tcctgcttatcacagtctacttagctccccaaagttaccttggaaattcagtgaaaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tcctgcttatcacagtctacttagctccccaaagttaccttggaaattcagtgaagactt 380

                                                                       
Query: 181 tataaactatatactgaaaggagtgaattggcctgagccaggctgtactccatgacaggc 240
           || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tacaaactatatactgaaaggagtgaattggcctgagccaggctg-actccatgacaggc 439

                   
Query: 241 tgcaaact 248
           ||||||||
Sbjct: 440 tgcaaact 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 655
Length adjustment: 9
Effective length of query: 247
Effective length of database: 646
Effective search space:   159562
Effective search space used:   159562
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)