BAC Information

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BAC

Clone NameMSMg01-096J05
Chromosome2 (Build37)
Map Location 128,072,838 - 128,073,177
singlet/doubletsinglet
Overlap geneLOC100043424
Upstream geneCiao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11
Downstream geneLOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096J05.T7 (MSMg01no096_j05.b1)MSMg01-096J05.TJ (MSMg01no096_j05.g1)
ACCAG313220AG313221
length779801
length of high quality
(start - end)
340 (125 - 464)251 (131 - 381)
definitionCHROMAT_FILE: MSMg01no096_j05.b1 PHD_FILE: MSMg01no096_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:58 2005CHROMAT_FILE: MSMg01no096_j05.g1 PHD_FILE: MSMg01no096_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTTTTTNTTGGTTTTTTCTTCGTGTTCCCTCTATTCC
CTNATCTATAATTGCGGCGCTATACGACTCCTATAGTTCGAGAACCGCGG
AATTCTCCTGTCTTTTCTTCAAGGTGCTGGGATTATGAGCGAACAAAGGC
AGCACACTGGGATTTCCTTACATACCACCTGGGGACTGAGCCTTTTACTA
ATTGAGCTTGTCTCTGGCTCCCTTCACCATGTATTTAACTCATGTTTTAT
CTACACACTAGAACCCTGGGAGGCTCCTCTGACCTGAGAATCTGCAAAGT
ATGGGAGACATCCATCCTCCTGCCCCACTCGGGTCTGCACAACTCCTCTA
CAGTGACCTCTGCCTGTTCAGATGGATAAGGAGCCTTTCTTTCTGCTCCT
TTCCCCTTCCTCCATCTCCCATCTCCTTTTCCTCTCTGTCCCTCCCGTCT
TCCTTTCTTTCTGTCACCCCCTGCATATCAGGGTCTTCCTGGGCAGTGCT
AGTCTATACCATATACTATACTCCCCTGAGGTATTCAGGCAAGAACCTGC
TACATTACTGGATACATGAATGTCCCTGAGCCTAGCTTGTGTTCTTAAGT
CTATCCCGATCTGTTTCTTGCAGCAACTCACCATGCAGGCCTGGCTTGCT
CCTATAGTGCTCGTCTTCTCTGCCTGGTATGGCCCACAATCGTTCTCCAT
CTTCTGTTGCATCCCAATACCCCACTATTATTCCCCCCTGTGTTTTCCCC
TCCTTGTTCTCCTCTTTTACTATTTACTC
TTTTTTTTTTTTNNNTNNNNNCCTTCTTCCCTCTNCCCCCCCTCCCCTCC
CCACCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCCCCATTCTCAGCATTTAATGCAACACCGC
AGGAAGAGTGGCTCCTGCATTACCGACTCCTATGGCTCTGTAGCCTGCTC
TGTAGCCTGCTCTGTAGCCTGCTCTGTAGCCTGCTCTGTAGCCTGCTCTG
TAGCCTGCTCTGTAACCTGCTCTGTAGCCTGCTCTGTAGCCTGCTCTGTA
ACCTGCTCTGTAGCCTGCTCTGTAACCTGCTCTCTCATGTGGGCTTGAAT
CCGCACCACTGTGCAAACCAGCCCTTTAAATCTTTGTCTGTGTCTGTTTG
TCTATCTCTCTCTCATGCACACATATGCATGTATATCTCCTGTGGGTCCT
GTCTCTCTGGATAAGCCTGACAAATGCGGACATCTTCCCAGAATTAACTC
TGTTCTCTGTGACAGACATAATATGTATGGTTATAAAACATGAGTAGAGG
TGGCCTATTTCCCTTTGCACCTAACGTTCCTTTACTTTCCTCCAGCTTAT
GTTGAAGTGTATTTTCCTGAGCATGTTTCTACCAACTTCCATTTAAAAAC
TCTTACCATTCATCCACCTCAGTATGCATGGCTTTTGCTCCCCTCCGTTC
GGGTTATCCTTTCCTCACCGACCGTGCCCCTCCCAAACTCTTGTGCTTCT
TTTTCACATTTCTTCTCTGATTCTTTTTCCCACATGGTTACATCCCCCTG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_j05.b1 MSMg01no096_j05.b1 CHROMAT_FILE:
MSMg01no096_j05.b1 PHD_FILE: MSMg01no096_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:58 2005
         (340 letters)



>mm_chr2_128072638_128073377
          Length = 740

 Score =  603 bits (312), Expect = e-177
 Identities = 333/340 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgggattatgagcgaacaaaggcagcacactgggatttccttacataccacctgggg 60
           ||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||||
Sbjct: 201 tgctgggattatgagcgaagaaaggcagcacactgggatttccttacatgggacctgggg 260

                                                                       
Query: 61  actgagccttttactaattgagcttgtctctggctcccttcaccatgtatttaactcatg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgagccttttactaattgagcttgtctctggctcccttcaccatgtatttaactcatg 320

                                                                       
Query: 121 ttttatctacacactagaaccctgggaggctcctctgacctgagaatctgcaaagtatgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ttttatctacacactagaaccctgggaggctcctctgacctgagaatctgcaaaatatgg 380

                                                                       
Query: 181 gagacatccatcctcctgccccactcgggtctgcacaactcctctacagtgacctctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagacatccatcctcctgccccactcgggtctgcacaactcctctacagtgacctctgcc 440

                                                                       
Query: 241 tgttcagatggataaggagcctttctttctgctcctttccccttcctccatctcccatct 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttcagatggagaaggagcctttctttctgctcctttccccttcctccatctcccatct 500

                                                   
Query: 301 ccttttcctctctgtccctcccgtcttcctttctttctgt 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttttcctctctgtccctcccgtcttcctttctttctgt 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)