Query= MSMg01no096_m01.b1 MSMg01no096_m01.b1 CHROMAT_FILE:
MSMg01no096_m01.b1 PHD_FILE: MSMg01no096_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:13 2005
(296 letters)
>mm_chr2_134746187_134746878
Length = 692
Score = 530 bits (274), Expect = e-155
Identities = 289/296 (97%), Gaps = 4/296 (1%)
Strand = Plus / Plus
Query: 1 atgaggtaaatggagcatcagggatcagagacgtctctctcatgcaccattctgtttccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaggtaaatggagcatcagggatcagagacgtctctctcatgcaccattctgtttccc 260
Query: 61 actcagtagacaaatgaaactccggctgccactgctgaagcactgcccccagcgtccttc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 actcagtagacaaatgaaactccggctgccactgctgaagcactgcccccagcgcccttc 320
Query: 121 tgctcatgctgagtccaccatctgtaatcctctcacctgcccttcctgattgatagacca 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tgctcatgctgagtccaccatctgtaatcctctcacctgcccttcctgat----agacca 376
Query: 181 ggtctgcttcccatctagtcacggggcataaatttaaaatgttcattcgcttggcctcag 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 377 ggtctgcttcccatctagtcacggggtataaatttaaaatgttcattcgcttggcctcag 436
Query: 241 taaatccttgttgaaggatttgtcctaaggaaataaatggaattggtgcttgaggt 296
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taaatccttgctgaaggatttgtcctaaggaaataaatggaattggtgcttgaggt 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 692
Length adjustment: 9
Effective length of query: 287
Effective length of database: 683
Effective search space: 196021
Effective search space used: 196021
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no096_m01.g1 MSMg01no096_m01.g1 CHROMAT_FILE:
MSMg01no096_m01.g1 PHD_FILE: MSMg01no096_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:14 2005
(475 letters)
>mm_chr2_134881045_134881919
Length = 875
Score = 911 bits (471), Expect = 0.0
Identities = 474/475 (99%)
Strand = Plus / Minus
Query: 1 caaaccaaccagggctacatagtgaaaacctgaccaaaagggcatgggagaagaaaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 caaaccaaccagggctacatagtgaaaacctgaccaaaagggcatgggagaagaaaacca 616
Query: 61 ttcacacactcaacaattactgacttggaataagaggctgaacatgcaaatggctagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttcacacactcaacaattactgacttggaataagaggctgaacatgcaaatggctagtgt 556
Query: 121 ctgttcacatataattcatgacaacagagctcttacctcaaggtctgcagtgacccactg 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 555 ctgttcacatataattcatgacaacagagcccttacctcaaggtctgcagtgacccactg 496
Query: 181 gaaccaaagcacaggtcagtaaccttcagctcaaataggcagtcacagatcagccatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaaccaaagcacaggtcagtaaccttcagctcaaataggcagtcacagatcagccatcag 436
Query: 241 ttaacagggtctactttctctactttctgttcttcctttcgatgaaggactaacaaggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttaacagggtctactttctctactttctgttcttcctttcgatgaaggactaacaaggca 376
Query: 301 gagataattctcaaaccaacgaagcctggtccctacttcttggtaactctagcttcctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gagataattctcaaaccaacgaagcctggtccctacttcttggtaactctagcttcctta 316
Query: 361 agtcaacaaccacccttcagcatgtgcttaacctctgtcccctttaatctgaaatctcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agtcaacaaccacccttcagcatgtgcttaacctctgtcccctttaatctgaaatctcta 256
Query: 421 cctgcattagagtctctgccaaaatacaagagacactaaccaactctcctggaaa 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cctgcattagagtctctgccaaaatacaagagacactaaccaactctcctggaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
