BAC Information

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BAC

Clone NameMSMg01-096M23
Chromosome2 (Build37)
Map Location 136,544,578 - 136,544,830
singlet/doubletsinglet
Overlap geneSnap25
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5
Downstream geneLOC668911, Mkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096M23.T7 (MSMg01no096_m23.b1)MSMg01-096M23.TJ (MSMg01no096_m23.g1)
ACCAG313399AG313400
length701729
length of high quality
(start - end)
297 (47 - 343)253 (57 - 309)
definitionCHROMAT_FILE: MSMg01no096_m23.b1 PHD_FILE: MSMg01no096_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:18 2005CHROMAT_FILE: MSMg01no096_m23.g1 PHD_FILE: MSMg01no096_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTCCAAAAACGGCGGAATTCTCCTACATTTCCGGATATATGCCAGACT
ATTGGTTGTTCTACCCAACCTAATGATAAGGCCCAATTGCTGACGTCAAT
TATTATGTCATCAAATACAGAGAAGTTATATGAGAATCTTCACCCCAACT
AATAGCATTCATGGTGCTGGAAAGATCTCTGCACAGTACTGTAGAAGAAA
ATGATTATCAATACCACCCCACAGTAGTGACCTGCCTGCTAGACATATTG
GTACAATAGTGGCACAAATGTTATAGGTGTAACCATAACGTTTTATTTGG
ATTTAAGGTACATTCATGAAATGGAACCCCATACGTGACACTGCTACAGT
GGCTAACAACTGGGGACAAGATAAGTAATGGACCTATACCAAAGTATAAT
TATTCTAAATGAATATAGTAATAAAATGGCTCCTAATGACATATCGCTGT
ATCTGTAGGTCAGCGCCATCATTTATCAACCATTATAGAAGCTTCTTGCA
GTAGATGGTAACATTGCTCTGCAACTGGACCATGTTGACAGAGTGAGACT
GGAATATTCAATGATAATTGGGATGCTTTCATCCAAGCTCTCCCCCTTCC
AATCTATGTATTAAAGAAGGCTAACAGAATATCTGAGGTGACGTATGATT
CCCAGAAAATTCTGTCTTTCAAACCCCCCTGTACTGATGCCCTACCACTC
C
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCA
CTTCTAAGATCTGTGACTGCAGGTTGACAGCAGAAGCATTGCTGAGACAA
CAGGATCCACAAGCCTTTCTTCTGAGGCCCACACACGTCGCTGAGGCCTT
TCAGCTGCGTCAGAATAGCAGCAATACTGACCAACACTGTCTGTGGATGA
GGAGGCCAAGTTTTACAGTGCCCTGGTGGGTTATTAGGAGACTGATTCTG
AAAACAGGAAATTATAAGCAGTTGCTTCAGGAGAGCTGTGAGCATGCCTC
GATTCTCAATCCAGGAGGGAAAGATGGGGAAAAAAATCACGTGCAGAGGC
CTGCAGTATAGTTTAGGCGATGAGTGCTTGCTTAGCATGCTTAATGCTCT
GGGACCAATCCTGTCTGTCTATCTATCATCTGTCTATCTGTCTATCTGTC
TATCTGTCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTAGCATCTATCTACCCTATCAATGTATA
TTCACTGTGATTCATTTGACCAGCATGACAACTGATGATACATAAAGCCA
CCAAGTCCCTTCAGCTAGCACCCCTGGCCTCTGGAGTCCGACTGACTACC
ATTATTCCCGTTCAGCTCTCTGAAACGCCCTTTAAATCTCGTGTCTTATC
CAACCCTTTCCCCTTGCCAATCGAAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_m23.g1 MSMg01no096_m23.g1 CHROMAT_FILE:
MSMg01no096_m23.g1 PHD_FILE: MSMg01no096_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:18 2005
         (253 letters)



>mm_chr2_136544378_136545030
          Length = 653

 Score =  474 bits (245), Expect = e-138
 Identities = 251/253 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatctgtgactgcaggttgacagcagaagcattgctgagacaacaggatccacaagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 453 agatctgtgactgcaggttgacagcagaagcattgctgagacaacaggatccaaaagcct 394

                                                                       
Query: 61  ttcttctgaggcccacacacgtcgctgaggcctttcagctgcgtcagaatagcagcaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttcttctgaggcccacacacgtcgctgaggcctttcagctgcgtcagaatagcagcaata 334

                                                                       
Query: 121 ctgaccaacactgtctgtggatgaggaggccaagttttacagtgccctggtgggttatta 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 333 ctgaccaacactgtctgtggatgaggagaccaagttttacagtgccctggtgggttatta 274

                                                                       
Query: 181 ggagactgattctgaaaacaggaaattataagcagttgcttcaggagagctgtgagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggagactgattctgaaaacaggaaattataagcagttgcttcaggagagctgtgagcatg 214

                        
Query: 241 cctcgattctcaa 253
           |||||||||||||
Sbjct: 213 cctcgattctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)