Query= MSMg01no098_d03.b1 MSMg01no098_d03.b1 CHROMAT_FILE:
MSMg01no098_d03.b1 PHD_FILE: MSMg01no098_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:13 2005
(515 letters)
>mm_chr2_135077563_135078478
Length = 916
Score = 775 bits (401), Expect = 0.0
Identities = 480/513 (93%), Gaps = 15/513 (2%)
Strand = Plus / Plus
Query: 4 ggaattccattgcacccatcccagaattcaactgagattcagatctagtc-atgaagtgc 62
|||||||||||||| ||||||||||||| ||||||||||||||||||| | |||||||
Sbjct: 204 ggaattccattgcattgatcccagaattcagctgagattcagatctagtcta-gaagtgc 262
Query: 63 aaattgtgtaacctggatgcccctagtggtcattctgaggcagggctctcaatgtccagt 122
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 263 aaattgtgtaacctggatgcccctagtggtcattctgagacagggctctcaatgtccagt 322
Query: 123 agacatgggtgacaggcagggagcgtaaatcacaaaacaagagatgaagagagccactat 182
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 323 agacatgggtgacaggcagggagcataaatcacaaaacaagagatgaagagagccactat 382
Query: 183 gataagccattgtgtgcaagatggcaggtcacctttaccctgcagaagtgctgagcactg 242
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 gataagccattgtgtgcatgatggcaggtcacctttaccttgcagaagtgctgagcactg 442
Query: 243 ggctgggtttggtaatgtctcaatagaactcacaaatttagatctctgtattcaattcct 302
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 443 ggctgggtttggtaatgtttcaatagaactcacaaatttagatctcggtattcaattcct 502
Query: 303 agcacttacttttttaaaaaa-tacaaagctgcggccccctaaaagtacactattagaac 361
|||||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct: 503 agcacttactttttaaaaaaaatacaaagctgcggcccccta-----------ttagaac 551
Query: 362 agattacgcagaccttcagcttcaacatgagagccagctatgagctttgcacaatgtacc 421
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 552 agattacgcagaccttcagcttcaacatgagagccagctatgagcttcgcacagtgtacc 611
Query: 422 atcggaggcaatgtatataacaaggggcaacattggggggattggggaggtcatttattt 481
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 612 atctgaggcaatgtatataacaaggggcaagattggggggattggggaggtcatttattt 671
Query: 482 taggaactaatatgaaaaat-tagccagtgcag 513
|||||| |||||||||||| |||| |||||||
Sbjct: 672 taggaattaatatgaaaaaaatagctagtgcag 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_d03.g1 MSMg01no098_d03.g1 CHROMAT_FILE:
MSMg01no098_d03.g1 PHD_FILE: MSMg01no098_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:13 2005
(483 letters)
>mm_chr2_135214185_135215067
Length = 883
Score = 926 bits (479), Expect = 0.0
Identities = 482/483 (99%)
Strand = Plus / Minus
Query: 1 tatacataatatttttaggtcatgagtgactgtgggcaactcaattcaaggaaagggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tatacataatatttttaggtcatgagtgactgtgggcaactcaattcaaggaaagggaga 624
Query: 61 ttgtgtggcaatttctaaagttctactaaaatgcatcccattatattagcactagtggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgtgtggcaatttctaaagttctactaaaatgcatcccattatattagcactagtggac 564
Query: 121 caagaagctggctaagaagatctgaattgtatatgtaaaggagaaacttaagaattaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caagaagctggctaagaagatctgaattgtatatgtaaaggagaaacttaagaattaaca 504
Query: 181 atatacaaattaaccatcgattcctgctaagcctgaaatctttaggaatcacaaatatta 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atatacaaaataaccatcgattcctgctaagcctgaaatctttaggaatcacaaatatta 444
Query: 241 agtggctcatatattgcaagcataaaggctaaagaacataaataaccgtgaaaatatacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtggctcatatattgcaagcataaaggctaaagaacataaataaccgtgaaaatatacc 384
Query: 301 tagagcaagccacaaggactctctctgaagccaacccaggaacgttacatacaaataaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagagcaagccacaaggactctctctgaagccaacccaggaacgttacatacaaataaat 324
Query: 361 aaacctagcattggagtattgcagactcaataaacaatcgggccaaatggtagtactttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaacctagcattggagtattgcagactcaataaacaatcgggccaaatggtagtactttt 264
Query: 421 gagaatctgtatttttcaactatagtgaaaatggcagggagtcctagagagcccattttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gagaatctgtatttttcaactatagtgaaaatggcagggagtcctagagagcccattttg 204
Query: 481 ttt 483
|||
Sbjct: 203 ttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
