Query= MSMg01no098_l03.b1 MSMg01no098_l03.b1 CHROMAT_FILE:
MSMg01no098_l03.b1 PHD_FILE: MSMg01no098_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:53 2005
(662 letters)
>mm_chr2_79556387_79557448
Length = 1062
Score = 893 bits (462), Expect = 0.0
Identities = 492/508 (96%), Gaps = 12/508 (2%)
Strand = Plus / Minus
Query: 5 gaattctttccc-acaactcaaggtatttgtagaatatttgtgtctcagaagt------- 56
|||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 922 gaattctttcccaagaactcaaggtatttgtagaatatttgtgtctcagaagtaacaaca 863
Query: 57 --aacaacaacaacaacaacaacaacaacaacaacttaaaatgtgagatgatattcagat 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 acaacaacaacaacaacaacaacaacaacaacaacttaaaatgtgagatgatattcagat 803
Query: 115 tgacttatgaaagcatgattatatctaaaatctggttttgctttaacttcctttgtaggt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tgacttatgaaagcatgattatatctaaaatctggttttgctttaacttcctttgtaggt 743
Query: 175 ttgtctaatttaaaagacttgaatgatcttatgttctcaaagcaaactgcagctcaaatc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttgtctaatttaaaagacttgaatgatcttatgttctcaaagcaaactgcagctcaaatc 683
Query: 235 tcaacataaaataaaataaaacaatataaaataaaataaaaaaataaaataaaatacttg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcaacataaaataaaataaaacaatataaaataaaataaaaaaataaaataaaatacttg 623
Query: 295 cttcttagcccctggtaatttctcctgttaagttgtgtgtggaggttcttggtaggactc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cttcttagcccctggtaatttctcctgttaagttgtgtgtggaggttcttggtaggactc 563
Query: 355 tttaaaagtcctgtgtggatttacatggaaaatcccatgccttggaagctggtttgtgag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttaaaagtcctgtgtggatttacatggaaaatcccatgccttggaagctggtttgtgag 503
Query: 415 taatgacccctgcacacacacacacacacacacacacacacacacatacacacagagaga 474
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 502 taatgacccctgcacacacacacacacacacacacacacacacacacacacacacagaga 443
Query: 475 gagagacagagagagagacagagagaca 502
|||||| ||||||||||| ||||||||
Sbjct: 442 gagagagagagagagaga--gagagaca 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_l03.g1 MSMg01no098_l03.g1 CHROMAT_FILE:
MSMg01no098_l03.g1 PHD_FILE: MSMg01no098_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:53 2005
(464 letters)
>mm_chr2_79387520_79388383
Length = 864
Score = 833 bits (431), Expect = 0.0
Identities = 458/469 (97%), Gaps = 5/469 (1%)
Strand = Plus / Plus
Query: 1 catcacgt-acacatggagtagggaaggaagaactgcatgaagagattaggaaggaatat 59
|||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 196 catcacgttacacatggggtaggggaggaagaactgcatgaagagattaggaaggaatat 255
Query: 60 agagacaaatatagactccagatgacagtggcccagcagtcatagggcaggtactggcta 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 256 agagacaaatatagactccagatgacagtggcccagcagtcatagggaaggtactggcta 315
Query: 120 aagcaagctgtgatgccctcgatggatgtcaaataacaag----agacaggattgtcctt 175
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 316 aagcaagctgggatgccctcgatggatgtcaaataacaagtaagagacaggattgtcctt 375
Query: 176 cagctttggtgatataaaggccagtgggaaccttgccaagagctctgcaggctgagtggg 235
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 376 cagctttggtgatataaaggccagtgggaaccttgccaggagctctgcaggctgagtggg 435
Query: 236 attcggattgggatgtgattaagaagtgcacttatacatttgaaatgttaacacactttc 295
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attcgggttgggatgtgattaagaagtgcacttatacatttgaaatgttaacacactttc 495
Query: 296 taaatggaatttgagacatctccgtttataaaggagatgactggcagagaggagactgaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 taaatggaatttgagacatctccgtttataaaggagatgactggcagagaggagactgaa 555
Query: 356 agagagcatgggtgcatgcctgtgtaagatctaaaggacagagataggttgaaatgttac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agagagcatgggtgcatgcctgtgtaagatctaaaggacagagataggttgaaatgttac 615
Query: 416 tgaaagggatagttggggagaactgtttatagggagggagttttcagac 464
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgaaagggatagttggggagaactgtttatagggagggagttttcagac 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
