BAC Information

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BAC

Clone NameMSMg01-098M21
Chromosome2 (Build37)
Map Location 173,846,382 - 173,846,735
singlet/doubletsinglet
Overlap genenone
Upstream geneRbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912
Downstream geneLOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098M21.T7 (MSMg01no098_m21.b1)MSMg01-098M21.TJ (MSMg01no098_m21.g1)
ACCAG314891AG314892
length692768
length of high quality
(start - end)
274 (18 - 291)350 (130 - 479)
definitionCHROMAT_FILE: MSMg01no098_m21.b1 PHD_FILE: MSMg01no098_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:02 2005CHROMAT_FILE: MSMg01no098_m21.g1 PHD_FILE: MSMg01no098_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTTTCAAAAGAGGATCCGCGGAATTCCTGATCTCTCCAGATTTTTA
ACATGAAGGGGGGTTGTATTGTGTCAAAGGCCTTTTCAGCATCTGAGATG
GCCATGTGTATTTTGTTTGTTTCTTTGAGTTTGTTTATATTGTGAATTAC
ATTGATGGATTTCCTTATATTGAACCATCCCTGCATCCCTGGGATAAGGC
CTACTTGATCATGTGAATGATCATTTTGATGCATTCTTGGATTTCGTTTG
CTTGAATTTTATTGAGTATTTTTGCTTCAATATTCATAAGGGAAATTGGT
CTGACGTTCTCTTTCTTTGTTGGGTGTTTGTGTGGCTTAGGTACCAGCCT
AAGTGTGGCATCATACAGTGAATTACCTAGTGTTCCCTCCGATTCTATTT
TGTGCAATAGCTTGAAACGCATTGTTTTTAGGTCTTCTTTGAAGGTCTGA
TAGAATTCTGAACTAGACTCATCTGCTCCTGGGTTGTTTCGCCTGGCAAA
CTTTTAATGACCTGCCCAATCTCCTTCACTCTTTTGCAACTGTTTACATG
CTTCATTTACCCTTGTTCACCTGTTATTCCTTTCTTACTATCCTCTCATC
ACTCTTATATACCCATCTCCTGTTCCTTTTTTTGCCCTGCCCCCCCTCCT
TGATTGCCTTCCTCACTTCCCCCTCCCCCCCGCCTTCTTCCC
NNNNNNNNNNNNNNNNNNTTTTTTNNNCCCCTCCCCCCCTCTATTTTTTT
NNCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCTGCTCAGGAGCGGGA
AGCTCCTTGCCATGTTCTTCCTCGCGCACCTCTTTCAGTGACAATGTGAG
CTGCACAGGTGGGCTTTATACCCACTCTTAGCATTCTCTTCAGTGTTCAC
GGGGCTCAGACTCTAGGATATATATTGCACAGCTGGGGTGACCACTCTAA
TGCTGCTCTTGGAGAGAGCCTTGTTCAGCCTACCCTACCTCCAGCAGCCA
GGAGAAGACATGTCTCAACTTGTTAACAGCAGCCAGGCCTCATCTCAAGT
TCCAGGCCCCATGCTGGGGCCAGACAGATCCTGAAATACAATTAGCGAGT
CGTGCCACCTCAGTCCAACTCCTACCAGGCCTTCAGCTCCGCGGCTCGAG
GCTCCCCATGGCGGGCTTCATTTTCGTACATCCCAACAGGCAGAGCTGTT
TGCTTCGCTGACTTGTTCAAGGTACTGCTTTTCAAAACACAGCAGTTGTA
GTTTAATGAAACATGAAAAAGAAAACCCTCCCTGTATCCCTTACCCCCTG
CCCGTACAAATTAAATAAACCCACCGTAACGAAGACCTGTAACTGGAAAC
GGCATGCCTGTCAGCCAGCAAATGTCCTAAGTCTTAATGAGAAGTACAAA
AGGTCACACCTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_m21.g1 MSMg01no098_m21.g1 CHROMAT_FILE:
MSMg01no098_m21.g1 PHD_FILE: MSMg01no098_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:02 2005
         (350 letters)



>mm_chr2_173846182_173846935
          Length = 754

 Score =  600 bits (310), Expect = e-176
 Identities = 342/354 (96%), Gaps = 4/354 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcctgctcaggagcgggaagctccttgccatgttcttcctcgcgcacctctttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 554 atttcctgctcaggagcgggaagctccttgccatgttcttcctcgtgcacctctttcggt 495

                                                                       
Query: 61  gacaatgtgagctgcacaggtgggctttatacccactcttagcattctcttcagtgttca 120
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 494 gacaatgtgagctgcacaggtgggcttggtacccactcttagcattctcttcagtgttca 435

                                                                       
Query: 121 cggggctcagactctaggatatatattgcacagctggggtgaccactctaatgctgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cggggctcagactctaggatatatattgcacagctggggtgaccactctaatgctgctct 375

                                                                       
Query: 181 tggagagagccttgttcagcctaccctacctccagcagccagg--a--gaagacatgtct 236
           |||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||
Sbjct: 374 tggagagagccttgttcagcctaccctacctccagcagccaggccagggaagacatgtct 315

                                                                       
Query: 237 caacttgttaacagcagccaggcctcatctcaagttccaggccccatgctggggccagac 296
           |||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 caacttgggaatagcagccaggcctcatctcaagttccaggccccatgctggggccagac 255

                                                                 
Query: 297 agatcctgaaatacaattagcgagtcgtgccacctcagtccaactcctaccagg 350
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 254 agatcctgaaatacaattagtgagtcgtgccacctcagtccaactcctaccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 754
Length adjustment: 9
Effective length of query: 341
Effective length of database: 745
Effective search space:   254045
Effective search space used:   254045
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)