Query= MSMg01no099_j14.b1 MSMg01no099_j14.b1 CHROMAT_FILE:
MSMg01no099_j14.b1 PHD_FILE: MSMg01no099_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:09 2005
(453 letters)
>mm_chr2_101546878_101547730
Length = 853
Score = 787 bits (407), Expect = 0.0
Identities = 441/455 (96%), Gaps = 7/455 (1%)
Strand = Plus / Minus
Query: 4 ggaattctcagttgtttcgagcgtgcttctcctgccgagttctataagcctctctaccca 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 726 ggaattctcagttgttttgagcgtgcttctcctgccgagttctataagcctctgtaccca 667
Query: 64 agcactcattgaatcacctttgccttatggttcattcacaaattataa--aacagagcac 121
|||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 666 agcactcattgaatcagctttgccttatggttcattcacaaat--taacgaacagagcac 609
Query: 122 agtctttgacacgctccagtttctacactggtatgagagtcctgcttttaacaatcccat 181
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 608 agtctttgacacgctccagtttctacactggtatgagagtcttgcttttaacaatcccat 549
Query: 182 ttgatgctgatgtgtttgtactcacccctcctcccgttgctagtgactacctactcctgc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttgatgctgatgtgtttgtactcacccctcctcccgttgctagtgactacctactcctgc 489
Query: 242 tgcagatgcccatgagcgtccttagaatgaagatttctttgcccgcgccccttggagtct 301
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgcagatgcccgtgagcgtccttagaatgaagatttctttgcccgcgccccttggagtct 429
Query: 302 aatgcagcacgtttgctacagggttggccataggtgatctcggtaacggagacagcttct 361
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 428 aatgcagcacgtttgctacaggtttggccataggtgatctcggtaatggagacagcttct 369
Query: 362 tct---cactcctctttcttctcctctaccctctcacctcctccatcctcttcttccttc 418
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcttcacactcctctttcttctcctctaccctctcacctcctccatcctcttcttccttc 309
Query: 419 tctttttatcttaagtgctggtgacagaatccaga 453
|||||||||||||||||||||||||||||||||||
Sbjct: 308 tctttttatcttaagtgctggtgacagaatccaga 274
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_j14.g1 MSMg01no099_j14.g1 CHROMAT_FILE:
MSMg01no099_j14.g1 PHD_FILE: MSMg01no099_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:09 2005
(299 letters)
>mm_chr2_101401661_101402359
Length = 699
Score = 495 bits (256), Expect = e-144
Identities = 289/300 (96%), Gaps = 2/300 (0%)
Strand = Plus / Plus
Query: 1 catgtgagacatcaaaatcagctctgcagtgccttccttttcagtgaagctcagtctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtgagacatcaaaatcagctctgcagtgccttccttttcagtgaagctcagtctctc 260
Query: 61 cacaaccacactgaatccaccatctccggacacacaggaccaaagccctacatacatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaaccacactgaatccaccatctccggacacacaggaccaaagccctacatacatatg 320
Query: 121 tgattctgttagtcctggtaatgtttggagcgtgtgattgtccttcacctctaaaaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattctgttagtcctggtaatgtttggagcgtgtgattgtccttcacctctaaaaaatg 380
Query: 181 cac-tcacactcccagacttcagcacaacacactcaagtccttgtatggtgccctcgtcg 239
||| | ||| |||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct: 381 cacat-acattcccagtcttcagcacaacacactcaagtccttgtatggtgccttaatca 439
Query: 240 caagcagattcagcagcccttatctcctgccccatttccctctcccatcgtcccaagcag 299
|| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 catgcagattcagcatcccttatctcctgccccatttccctcttccatcgtcccaagcag 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
