BAC Information

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BAC

Clone NameMSMg01-099J20
Chromosome2 (Build37)
Map Location 131,465,359 - 131,465,671
singlet/doubletsinglet
Overlap genenone
Upstream geneProsapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
Downstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099J20.T7 (MSMg01no099_j20.b1)MSMg01-099J20.TJ (MSMg01no099_j20.g1)
ACCAG315510AG315511
length748712
length of high quality
(start - end)
326 (45 - 370)316 (73 - 388)
definitionCHROMAT_FILE: MSMg01no099_j20.b1 PHD_FILE: MSMg01no099_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:11 2005CHROMAT_FILE: MSMg01no099_j20.g1 PHD_FILE: MSMg01no099_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGA
GGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTCTA
TTTAGGAATTTTTCCCCTGTACCCGTATCTTCAAGGCTTTTCCCTACTTT
CTCCTCTATAAGTTTCAGTGCCTCTGGTTTTATGTGAAGTTCTTTGATCC
ACTTAGATTTGATAAGGGACTACACCCGGCTGCTCTCCCTTCTCGCTATC
TCTCTCTCTTAGTACTTGCCGTATTATCCCCTATTTATTCGACATTCCTA
GGTTATCTTTAGTTTCCCGACGACACGCATGCTTTCCACTTGCATTTCTT
TCTATTTGTATTATAATCCTGTTGCGCCTTTTTTTTTTTGTCTGAATAAG
GTTGTCCTTTTCCTCCCTTGCCTTGTTTTTCTATCTTCCCCTTGTCTTTT
CTCCATTTTCGCCCACTTATTTCTCTTGGCCCCCTCTCTCTCCTGTTTCT
TTTCCGCCATTTTATTTTCTCATTGCCGCTCCTACTTTTTTCTTCTCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTGCTTTCCATGGTTGGCGTCCTTCA
CAGCTCAGATCTATAACTTTTTCTGTGGAGTAGGATAGGAGAAAGCAGCA
GACCCCCCAAGCTTTGCCCCACTCTGAATCACTCTGTGGGTGATGTTGCA
GAGACAGGGTACACACATCCACACTCCTTGCCTTTTGTGGGAGCCCTCAG
TACCAAACACCAAAGATCATAGCTGGACTACACATCCCATGAAGAACAGA
ATGAAAGATTTAGGGAAAAAGATGTCTCTAGGAAGCCCAGTGTTGAACTA
AACACTCCCAGTTTGGCTCTTGTTAAATACCAAAGGGTGAGACTAAGGCT
CTGGAAGGGGAGGGACGCTCGAGGTTAGTTTAGGATGAGCATGCCCTTTA
CCAGCTGTTCTATTGATTTGGGTTCCTGACCACAGAAGCAGAGCTCGGAC
TTGTTAGTACCGGATACCCCCGTTTATTGGCGAAGAATACGTGACTCATT
CCTTCACTTTCCCCGCTGACATAGACAGCTTACCGCTGTTGTAAACTGCC
GCAGACTGGATCTTTGCCTCACATTTCCCCCCAGCTGACTGTTATTTGTT
GCTGGGATCTTCCCCCTGCTACTTTCTGACCCTCTTCGCCTTTTTTGCCT
GCACCCCCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_j20.g1 MSMg01no099_j20.g1 CHROMAT_FILE:
MSMg01no099_j20.g1 PHD_FILE: MSMg01no099_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:11 2005
         (316 letters)



>mm_chr2_131465159_131465872
          Length = 714

 Score =  567 bits (293), Expect = e-166
 Identities = 309/315 (98%), Gaps = 2/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgctttccatggttggcgtccttcacagctcagatctataactttttctgtggagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgctttccatggttggcgtccttcacagctcagatctataactttttctgtggagta 260

                                                                       
Query: 61  ggataggagaaagcagcagaccccccaagctttgccccactctgaatcactctgtgggtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 261 ggataggagaaagcagcagaccccccaagctttgccccactctgaatca--ctgtgggtg 318

                                                                       
Query: 121 atgttgcagagacagggtacacacatccacactccttgccttttgtgggagccctcagta 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atgttgcagagacagggcacacacatccacactccttgccttttgtgggagccctcagta 378

                                                                       
Query: 181 ccaaacaccaaagatcatagctggactacacatcccatgaagaacagaatgaaagattta 240
           |||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 379 ccaaacaccaaagatcatagctggactacatataccaggaagaacagaatgaaagattta 438

                                                                       
Query: 241 gggaaaaagatgtctctaggaagcccagtgttgaactaaacactcccagtttggctcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gggaaaaagatgtctctaggaagcccagtgttgaactaaacactcccagtttggctcttg 498

                          
Query: 301 ttaaataccaaaggg 315
           |||||||||||||||
Sbjct: 499 ttaaataccaaaggg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 714
Length adjustment: 9
Effective length of query: 307
Effective length of database: 705
Effective search space:   216435
Effective search space used:   216435
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)