Query= MSMg01no099_k08.b1 MSMg01no099_k08.b1 CHROMAT_FILE:
MSMg01no099_k08.b1 PHD_FILE: MSMg01no099_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:13 2005
(406 letters)
>mm_chr2_110024893_110025698
Length = 806
Score = 719 bits (372), Expect = 0.0
Identities = 397/406 (97%), Gaps = 4/406 (0%)
Strand = Plus / Plus
Query: 4 gaattcaatgcatgctgcaattt-ggttaagacaactggctaaggatctcccttgatcca 62
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcaatgcatgctg-aattttggttaagacaactggctaaggatctcccttgatcca 260
Query: 63 accatttctgtctcttttagagctaggcttataggtgcacatagcattgcctggctctta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatttctgtctcttttagagctaggcttataggtgcacatagcattgcctggctctta 320
Query: 123 tggtggtctccaggatctggaatcaggtcctcatgcctgcacaccaggcttcttcctcat 182
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtggtctccaggatctggactcaggtcctcatgcctgcacaccaggcttcttcctcat 380
Query: 183 tgagtcattcttttttttttttttt--aattttatttcgatcagtgttctgcctctgtgt 240
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtcattctttttttttttttttttaattttatttcgatcagtgttctgcctctgtgt 440
Query: 241 atgtccatgtgagccagtgtgcctcctcattttctgggtattctctaaccagcattggaa 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 atgtccatgtgagccagtgtgcctcctcattttctggggattctctaaccagcattggaa 500
Query: 301 ttttaagggcgaacttctgggtccctcacaaacttgacccatctgcagacaactactggt 360
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ttttaagggtgaacttctgggtccctcacaaacatgacccatctgcagacaactactggt 560
Query: 361 attctgggacaaaaccttgatcttttggcattctacattcatcaaa 406
|||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 attctgggacaaaaccttgaccttttggcattctacattcatcaaa 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_k08.g1 MSMg01no099_k08.g1 CHROMAT_FILE:
MSMg01no099_k08.g1 PHD_FILE: MSMg01no099_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:13 2005
(343 letters)
>mm_chr2_110150301_110151043
Length = 743
Score = 555 bits (287), Expect = e-162
Identities = 302/307 (98%), Gaps = 1/307 (0%)
Strand = Plus / Minus
Query: 38 agacatggtttggcacataagagggcttactgatctatttgaagacaagagttacatccc 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agacatggtttggcacataagagggcttactgatctatttgaagacaagagttacatccc 684
Query: 98 agaacatcagaccactcatgaaatacctgtagctccagctccaggggacctaaggctcct 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agaacatcagaccactcatgaaatacctgtagctccagctccaggggacctaaggctcct 624
Query: 158 ttctggtctccatggtatttatacatacacatac-aaaaaataaatcattttaaataaat 216
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 623 ttctggtctccatggtatttatacatacacatacaaaaaaataaatcattttaaataaat 564
Query: 217 atattaatgaatatataatagagatgaactgagattataatacatgccagcacacaggaa 276
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 563 atattaatgaacatataatagagatgaactgagattagaatacatgccaacacacaggaa 504
Query: 277 acctagatgataaaacaaaataggaagatttttattttattcttaggcagatttcactat 336
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 503 acctagatgataaaacaaaataggaagatttttgttttattcttaggcagatttcactat 444
Query: 337 catcaag 343
|||||||
Sbjct: 443 catcaag 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
