BAC Information

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BAC

Clone NameMSMg01-100G08
Chromosome2 (Build37)
Map Location 152,903,613 - 152,903,931
singlet/doubletsinglet
Overlap geneBC020535
Upstream geneScrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7
Downstream geneHck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100G08.T7 (MSMg01no100_g08.b1)MSMg01-100G08.TJ (MSMg01no100_g08.g1)
ACCAG316108AG316109
length733678
length of high quality
(start - end)
323 (44 - 366)535 (56 - 590)
definitionCHROMAT_FILE: MSMg01no100_g08.b1 PHD_FILE: MSMg01no100_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:14 2005CHROMAT_FILE: MSMg01no100_g08.g1 PHD_FILE: MSMg01no100_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCGCTGTTCCCCTCTGCATGGAATGACCTGTCCCCTTTATTTCCAGC
TCAGCTGTTGTCAGGAAGCCCTCCTGGTTCCTGGATAAGGTAGAGTCCCC
TTCTGACTCTCCCATAGCCCAGGAAGCTCCTTGTCAGTGTGGCGTCATCA
CTGCTGGCTGCCACCTCTGCTGAATTGTGTGGCCCTTCTCCTTTCTCTCC
GCTGAGTTCTTTTTTATAAACTAGGCTGCCCGGATCATCGTGCAGGGTTT
TGTTTTTTGACAGGGTCTCACATGTCCTAGAATGGTCTTAAGCTCTCTAT
GTAGCAGAGATTAGCCTTGACCTGATGGCTTCTCTCTGCTCCCCAACCTC
CGAAGGGGCTGCAAGTTGTTAGGCATGGAACCCCCCCACCCAGGCTTTAT
GCCAGCGACCAGGGCTTGGGAATTGAAAGCCCTCCTGATATTCTCTAGGC
CAACCCCCTTTTTTTTTCTTTTGCGCCCTTCCCCAAGGCCGCACGTGCCG
CACCTCTTTCCCCTTACTTCTCCTACCTTCCTTCTAAAAAAAAACCCCCC
CCGGCGTTGTTTTTCCCCCCCCCAACCCCCGCACCTCCCCTCTCCCCCCA
TTCCCCCCCACCCCCTGGTGCCTTACTCTCTACCGTTGCCCACTACTGAT
ATCCTACGTCCCTCCCCGCCTTCGCCCCTTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCATATTGGTTCCCTGAACTGTAGAGTGAGGGCTATTATGGTTGG
AAAGGCCAAATGGAAGCCTTTAGAGTTGCCTTTGCCAAAGAAAATAGTGA
ATCAAAAACAGTATCGTATTCCTGGAGGCATTGCAGAATTTACTGCCACT
ATCAAGGACTTGAAAGACGCAGGGGTGGTGGTTCCCACCACATCTCCGTT
TAACTCTCCTATCTGGCCAGTGCAGAAAACAGATGGATCATGGAGAATGA
CAGTTGATTATCGAAAACTAAATCAGGTAGTAACTCCAATTGCAGCTGCT
GTACCAGATGTAGTTTCGTTACTTGAGCAAATTAACACATCTCCTGGCAC
CTGGTATGCGGCTATTGATCTGGCAAATGCCTTCTTCTCAGTACCTGTCC
ATAAGGACCACCAGAAGCAATTTGCTTTCAGTTGGCAAGGCCAACAGTAT
ACCTTCACAGTTTTGCCTCAAGGATATATTAACTCTCCTGCCCTGTGTCA
TAATTTAGTTAGAAGGGATCTTGATCGTTTGGATCTTCCATAAAATATCC
CATTGGTGCCCTATATTGATGACCTTATGCTGATTGAACCAAGCGAGCAG
GAAGTAGCAACCACTTTGGACTCATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_g08.b1 MSMg01no100_g08.b1 CHROMAT_FILE:
MSMg01no100_g08.b1 PHD_FILE: MSMg01no100_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:14 2005
         (323 letters)



>mm_chr2_152903478_152904200
          Length = 723

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcgctgttcccctctgcatggaatgacctgtcccctttatttccagctcagctg 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaattctcactgttcccctctgcatggaatgacctgtcccctttatttccagctcagctg 395

                                                                       
Query: 65  ttgtcaggaagccctcctggttcctggataaggtagagtccccttctgactctcccatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttgtcaggaagccctcctggttcctggataaggtagagtccccttctgactctcccatag 335

                                                                       
Query: 125 cccaggaagctccttgtcagtgtggcgtcatcactgctggctgccacctctgctgaattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cccaggaagctccttgtcagtgtggcgtcatcactgctggctgccacctctgctgaattg 275

                                                                       
Query: 185 tgtggcccttctcctttctctccgctgagttcttttttataaactaggctgcccggatca 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgtggcccttctcctttctctctgctgagttcttttttataaactaggctgcccggatca 215

                                                                       
Query: 245 tcgtgcagggttttgttttttgacagggtctcacatgtcctagaatggtcttaagctctc 304
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 214 tcgtggagggttttgttttttgatagggtctcacatgtcctagaatggtcttaagctctc 155

                              
Query: 305 tatgtagcagagattagcc 323
           |||||||||||||||||||
Sbjct: 154 tatgtagcagagattagcc 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)