BAC Information

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BAC

Clone NameMSMg01-100H06
Chromosome2 (Build37)
Map Location 56,255,904 - 56,256,191
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100H06.T7 (MSMg01no100_h06.b1)MSMg01-100H06.TJ (MSMg01no100_h06.g1)
ACCAG316152AG316153
length698704
length of high quality
(start - end)
281 (35 - 315)288 (56 - 343)
definitionCHROMAT_FILE: MSMg01no100_h06.b1 PHD_FILE: MSMg01no100_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:19 2005CHROMAT_FILE: MSMg01no100_h06.g1 PHD_FILE: MSMg01no100_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTTGTT
TGTCTCCGAGCCCCATTTTTTAGTGGGGTTATTTGATTTTCTGGAGTCCA
CCTTCTTTAGTTCTTTATACATATTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTACAGAAGCTTTGCACTTTCATGAGGTCCCATT
TGTCAATTCTCGATCTTACAGCACAAGTTATTGCTCTCTTGTGAGACTAT
GCCGGGGCCTAGCATTATCATAAGTGGATGCTCACAGTCAGCTATTGGAT
GGATCACGGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTA
AAGGGAACTGCAATCCTATCGGTGGAACAACATTATGATCTAACCACTAC
CCCCTGGAGCTCATGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGT
CGGCCATCACTGGAAAGAGAGGCCCATTGTTCATGCCAACTTTATATGCA
CCAGTACAGTTCACCGCTATGACCAATAAGCGGGAGTGTTTGCCCCGAAT
AATGATCGTTAACATCCCTCCCTTTCATCTATCCTTACCCTCCTTACTTT
TCTTCTCCTTTCTTTTTATCTCCCTCTTCCTTCCCTCTCTCTATATTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTTTAAAAAAAATTATGGGGAAGTTCCTAAGAGGACACTTTTTT
GCATAGATCACTTTCATTGGCAGAAACACAGCTTGGAGAAGCACTGAATT
TTATATGTGGAAGTCTTCAGAAAGTGTTGAGAATTGGTATGCTCATCTTA
TACATTGCTTCATCTTAATATAGGAATGCTACTAAGGCTAAGCCAGGAGA
ATACTAGAAATATATAAAGATAAATAATATGTACCTAAAAGATAATATCA
TTCAGTCGTACGTTCTTTCAACAACTTTTAGATTTTGTTTCTATAAAGTC
TCCCGCCCCGTTAAAATAAATATTTATTCTGACTATATCAAAGTCCACTG
AGACACACAGAGTAAAAAGTGGAACCTATATGTTCTTCCCTAATCAGATT
CAAGGCATCAAGTCATGTTTTATGTCAAGGTCCTTGCTTCTGTTTGCGTT
TGTGCAGATGTGAGATAAAAACCTAGTCTCTTGACTCTAGCTGCATATGT
ATCAAAAGATGCCCTAGTCGGCCATCACTGGAAAGAGAGGCCCAATGGAC
TTGCCAACTTTATTTGTCCCTGTATTGGGAAATGCCCTGGTCTTAAAGTG
GGAGTTGTGTGGGTCTTGTGGGTTCTTGCTCCTTACCAGTTTTTCCCGCT
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_h06.g1 MSMg01no100_h06.g1 CHROMAT_FILE:
MSMg01no100_h06.g1 PHD_FILE: MSMg01no100_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:19 2005
         (288 letters)



>mm_chr2_56255706_56256393
          Length = 688

 Score =  522 bits (270), Expect = e-153
 Identities = 283/288 (98%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttaaaaaaaa--ttatggggaagttcctaagaggacacttttttgcatagatcactt 58
           |||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 199 tgtttaaaaaaaaaattatggggaagttcctaagaggacacttttttgtatagatcactt 258

                                                                       
Query: 59  tcattggcagaaacacagcttggagaagcactgaattttatatgtggaagtcttcagaaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcattggcagaaacacagcttggagaagcactgaattttatatgtggaagtcttcagaaa 318

                                                                       
Query: 119 gtgttgagaattggtatgctcatcttatacattgcttcatcttaatataggaatgctact 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgttgagaattggtatgctcatcttatacattgcttcatcttaatataggaatgctact 378

                                                                       
Query: 179 aaggctaagccaggagaatactagaaatatataaagataaataatatgtacctaaaagat 238
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaggctaagccaggagaatactaaaaatatataaagataaataatatgtacctaaaagat 438

                                                           
Query: 239 aatatcattcagtcgtacgttctttcaacaacttttagattttgtttc 286
           ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatatcaatcagtcgtacgttctttcaacaacttttagattttgtttc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)