BAC Information

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BAC

Clone NameMSMg01-100N17
Chromosome2 (Build37)
Map Location 89,661,314 - 89,661,856
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255
Downstream geneOlfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100N17.T7 (MSMg01no100_n17.b1)MSMg01-100N17.TJ (MSMg01no100_n17.g1)
ACCAG316437AG316438
length725734
length of high quality
(start - end)		549 (40 - 588)519 (75 - 593)
definitionCHROMAT_FILE: MSMg01no100_n17.b1 PHD_FILE: MSMg01no100_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:52 2005CHROMAT_FILE: MSMg01no100_n17.g1 PHD_FILE: MSMg01no100_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CATACTTCTGGCATGTTGTGTTTCATTTTTTGAGACAGGTTTCTCTACAC
ATCCCTGGCTAATTTGGAACTCACTACACAGACCAGGCCTCAAACCCATA
CAGATCCACCTGCTTTTGCATTGCAACATCTAGGATTAAAGGTGTGCAAC
ATCAGGCCTGCCTGCTATAATTCAATTTTTATATTTACATTTCTAATTGC
CACATTGATTTCTTCATTTATACATTTACTATTCCACAGAATATCACTTT
CTTTTCATGTATTCTTCCAATAATCACAGATTTTTGGTATTTTACTTGTG
TATTTTATTTTCTGTAGTCAGAAAAGATATGTGGGTTGATTTTGACCTTG
TAATATCTGGAGATATGATTCATATGCTAACTTAATTTCAGTCTTTAAAA
GGGTGATGATAAGAATGTTTATTATGGAGCTTTATGTGGTCTGTGAATTT
TATCTTGGGTATTCTGAGCTTTTGGCTAATATCCACGTATCAGTGAGTGC
ATACCATGTGTGTTCTTTTCTGACTAGGTTACCTTTCCCAGGATGATATT
TTCTACTTCCATCCATTTGCCTAAGAATTTCATGAGTTCATTGTTTTTAA
TAGCTGAATACGACTCCATTGTGTAAGTGTACCACATTTTCTGTATCCAT
TCCTCTGTTGAAGAACATCTGGTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATAAGGAGATAGAAACATTAAAGCG
GACTCAAGCTGAAATGAATATGGAAGTGAAAGTTCAATAGCTCAACTAGA
AAACTTTAAAAAAAATATTATGAGTAGAAAAAATTCAAGCAGAAGATAGA
ATATCAGGACTTGTAGACTAAGTACCGATTCTAGACCAAATAAGCAAAGA
CTATGAAGTTAAAAGCATGTTAGGAAGAAACATACCTTCCCTGTAAATTT
GGGACACCACAAAACAAACAAACAAATTAACCAACCAATCATCATCAACA
ACAACAACAACAAACCCCAACCATATGGATTATCAAAATAGGTAAAATAT
TCCCAAGGTGATGGCTTCTATCAAGTCTTCAACAAGATCAAAGAAGAAAA
CATCCACAAGTCAAGGAAAGACACATCCATGCAGATATAAGAAACATATA
GAAAACCAGATAAACAGATCCAGATAAGCCCCCCCCCCATGGCATATCAT
AGTTAAAATACTACAAATACAGAGTAAAAAAAAAGTATATCACAAGCTAC
AAGAGAAAAAAACAAACAAAGTACAAATCACATATATAGGAAAACCTGTG
AGAGTAACAGCTAAATTCTAAATGGAAACTTTGAAATCTAAAAAGCCTGA
AAAGATGCATTCCTGGTCCTAAACGACTATGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_n17.b1 MSMg01no100_n17.b1 CHROMAT_FILE:
MSMg01no100_n17.b1 PHD_FILE: MSMg01no100_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:52 2005
         (549 letters)



>mm_chr2_89661111_89662059
          Length = 949

 Score =  980 bits (507), Expect = 0.0
 Identities = 534/543 (98%), Gaps = 4/543 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattc-atacttctggcatgttgtgtttc-attttttgagac-aggtttctctacacat 63
           |||||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||| 
Sbjct: 204 gaattctatacttttggcatgttgtgtttcaattttttgagacaaggtttctctacacag 263

                                                                       
Query: 64  ccctggctaatttggaactcactacacagaccaggcctcaaacccatacagatccacctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccctggctaatttggaactcactacacagaccaggcctcaaacccatacagatccacctg 323

                                                                       
Query: 124 cttttgcattgcaacatctaggattaaaggtgtgcaacatcaggcctgcctgctataatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttttgcattgcaacatctaggattaaaggtgtgcaacatcaggcctgcctgctataatt 383

                                                                       
Query: 184 caatttttatatttacatttctaattgccacattgatttcttcatttatacatttactat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caatttttatatttacatttctaattgccacattgatttcttcatttatacatttactat 443

                                                                       
Query: 244 tccacagaatatcactttcttttcatgtattcttccaataatcacagatttttggtattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tccacagaatatcactttcttttcatgtattcttccaataatcacagatttttggtattt 503

                                                                       
Query: 304 tacttgtgtattttattttctgtagtcagaaaagatatgtgggttgattttgaccttgta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tacttgtgtattttattttctgtagtcagaaaagatatgtgggttgattttgaccttgta 563

                                                                       
Query: 364 atatctggagatatgattcatatgctaacttaatttcagtctttaaaagggtgatgataa 423
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atatctggagatgtgattcatatgctaacttaatttcagtctttaaaagggtgatgataa 623

                                                                       
Query: 424 gaatgtttattatggagctttatgtggtctgtgaattttatcttgggtattctgagcttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaatgtttattatggagctttatgtggtctgtgaattttatcttgggtattctgagcttt 683

                                                                       
Query: 484 tgg-ctaatatccacgtatcagtgagtgcataccatgtgtgttcttttctgactaggtta 542
           ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgggctaatagccacttatcagtgagtgcataccatgtgtgttcttttctgactaggtta 743

              
Query: 543 cct 545
           |||
Sbjct: 744 cct 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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