BAC Information

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BAC

Clone NameMSMg01-101D18
Chromosome2 (Build37)
Map Location 25,554,875 - 25,555,169
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10
Downstream geneLcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101D18.T7 (MSMg01no101_d18.b1)MSMg01-101D18.TJ (MSMg01no101_d18.g1)
ACCAG316699AG316700
length718726
length of high quality
(start - end)		294 (73 - 366)51 (76 - 126)
definitionCHROMAT_FILE: MSMg01no101_d18.b1 PHD_FILE: MSMg01no101_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:22 2005CHROMAT_FILE: MSMg01no101_d18.g1 PHD_FILE: MSMg01no101_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:22 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATAATTTGCGGCCGTATACGACTCCTATTTCGAGAGAGAGGCGCGGA
ATTCTTCATGCTTCCATTTACAAGTGAGATGTAGGGAAAGTGAACTCTAT
CTGGTGGTTCAGTAGATGGGCCTTGGCCGGTTGTGAAAAAGGACCAAGAC
ATCTTAGAGTAAGAAGTGCTCTGTAGAGAGCACGGCTGACCTCATTGCAG
GATGAAGTGGGTCAGGGGTCATGGTATTCCCTAGTGGCAGGGTGTCTACC
TTGATGATATTTTGTGACCCCACTTACAGGGAAGTCCTGGTGGGGCATCC
AGGCAGGGAAGGGACAATGAGTTGTGTCCCCAGGCAGGGGCCAAGCCATC
TGGGACCCAGAAGATGGTCTCTGGTCGCGAAACTCAGCCTGGTTCTCAGC
AGCAGGAGATCAGAGGCCAGATCTCAGGGAGCATAGCTCAGGGCAGCCAT
GGGCAGACGCATGGCAGGAGTGTGAAGGGAAGCCTGGCCCTTCCCCTCCA
CCCGAGTTACTCATTCCCCAGAGTCCTTTGTGAGCACAGCACTTGGGTGG
CACAGACCTTCCAGAGCATTGTGTTTCTTTCTTTATCTGCAGGTGACACT
AAGTTGATATTCATCAGATCCCAACAACAACAACCTTCCGCTCCCTGATG
GATGTGTGATTTGGCATGACAGATGGACTGGATGGACATGGCTAGTGCCT
AGTGTGCACTCGCTCCTG

TTCGATGAAGTGAGTAGGCTGGCGGCGCCTGGTTCAAAATGGGGGTGAAC
TATAGAAGGTTTCGAGGAATTCGTTTTTACTTTTAAATTTTAATGGCCTG
TGGCCACCCACTTCCTCTAGCACCACACAAGAGGAGGGATTAGAAGTATC
CATTTTACTCCAACCTATGTTTAAGATACCCTAAGATGAAGACGCATCGC
ACAGCCCTACGGGAGCAGAGGGAGTTTATGAATGGCCTGCCCCTCTTACA
GCCTCTGCTCAGAGGCACCTTTGGACCTATAGGATTTAGGCCTGAGATGG
CCTTCTGGCTGCACTGACTTTGTTTTGTGGGGTGTTCATAGTATCGAATC
CTGCATTTCTTTTTTCCCCCCCCCCCCCCCGAAGAGAGAGGCATATATTC
GCATTCTCTGCGATCTTTGTGTCCTTATAACCCTCCTGTTGCTGCGCTCT
TTTCTATTATGTTATTGTAGTTATTCTCCCTATATCCGTTATTGGCTTTG
CATGTAATATATCCTTGCATCTGCTTTATTTTCTTTGTCTCTTTCTTCTC
TATCTGTTCGTCCACCTTCTATGTGTCTACTAAGTCTCTTTTCCTGTTCC
CTTGTTCCTTACTACATATCTTTTCCTCCCTATTTTTTATATTTTTTCTC
TTCCCTCGTTCTTCTCTCCTTTACTATCGCATCCTCCCCGCCCGTCTTTT
CTTTCTCTCGCCGATCTTTCACTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_d18.b1 MSMg01no101_d18.b1 CHROMAT_FILE:
MSMg01no101_d18.b1 PHD_FILE: MSMg01no101_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:22 2005
         (294 letters)



>mm_chr2_25554675_25555369
          Length = 695

 Score =  501 bits (259), Expect = e-146
 Identities = 286/295 (96%), Gaps = 1/295 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgagatgtagggaaagtgaactctatctggtggttcagtagatgggccttggccgg-t 59
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 201 agtgagatgtagggaaagtgaactctacctggtggttcagtagatgggccttggccggtt 260

                                                                       
Query: 60  tgtgaaaaaggaccaagacatcttagagtaagaagtgctctgtagagagcacggctgacc 119
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tgtgaaaaaggcccaagacatcttagagtaagaagtgctctgtagagagcacggctggcc 320

                                                                       
Query: 120 tcattgcaggatgaagtgggtcaggggtcatggtattccctagtggcagggtgtctacct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattgcaggatgaagtgggtcaggggtcatggtattccctagtggcagggtgtctacct 380

                                                                       
Query: 180 tgatgatattttgtgaccccacttacagggaagtcctggtggggcatccaggcagggaag 239
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 381 tgatgatattttgtgaccccacttacagggaagccctgatggggcatccaggcggggaag 440

                                                                  
Query: 240 ggacaatgagttgtgtccccaggcaggggccaagccatctgggacccagaagatg 294
           |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggacaatgaggtgagtccccaggcaggggccaagccatctgggacccagaagatg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space:   195510
Effective search space used:   195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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