Query= MSMg01no101_l04.b1 MSMg01no101_l04.b1 CHROMAT_FILE:
MSMg01no101_l04.b1 PHD_FILE: MSMg01no101_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:00 2005
(637 letters)
>mm_chr2_18253969_18255006
Length = 1038
Score = 996 bits (515), Expect = 0.0
Identities = 585/635 (92%), Gaps = 46/635 (7%)
Strand = Plus / Plus
Query: 5 gaattccacttgtacgccagcacacgtgcacacacaacacaaatgtaatagaataaattt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacttgtacgcaagcacacgtgcacacacaacacaaatgtaatagaataaattt 264
Query: 65 accctactgtaattggaaggtgatatcttgctggagcgaatataatttctctaggctact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accctactgtaattggaaggtgatatcttgctggagcgaatataatttctctaggctact 324
Query: 125 ctttggtaggtaagtgtgcttacttactaacatcctttactacagtcccgttaagagggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttggtaggtaagtgtgcttacttactaacatcctttactacagtcccgttaagagggt 384
Query: 185 tagaaaatggagctgacattagtggcacacattttaaagaatggacacttttaacttgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaaaatggagctgacattagtggcacacattttaaagaatggacacttttaacttgtc 444
Query: 245 ctaagtttcccatgagtattatctgttttgttgttgttgttgtttgttttgtttttgttt 304
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 445 ctaagtttcccatgagtattatctgttttgttgttgttgtt---tgttt-gttttt---- 496
Query: 305 agttttttggttttttgagacagggtttctctgtgtagccctggctgtcctggaactcac 364
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ag-------gttttttgagacagggtttctctgtgtagccctggctgtcctggaactca- 548
Query: 365 tttgtagatcaggctggccttgaactcagaaatctgcctgcctctgcctcctgagtgctg 424
|||||| |||||||||||||||||||||||||
Sbjct: 549 ----------------------------gaaatccgcctgcctctgcctcctgagtgctg 580
Query: 425 ggattaaaggcatgcgccaccacgccctgcttgagtattatctttgtactacagatcatc 484
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggactaaaggcgtgcgccaccacgccctgcttgagtattatctttgtactacagatcatc 640
Query: 485 aacagagcctggagttcaaatttttccaattcagttccatcaatactaacttaaaaatca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aacagagcctggagttcaaatttttccaattcagttccatcaatactaacttaaaaatca 700
Query: 545 ctgtgacactgcatctactgcttcagatttaacactttgtactttgtcatttactttgtt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ctgtgacactgcatctactgcttcagatttaacactttgtactttgtcatttactttgtt 760
Query: 605 cctaggacta--ctttgtccaatggcttctcttat 637
|||||||||| |||||||||||||||||||||||
Sbjct: 761 cctaggactatactttgtccaatggcttctcttat 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space: 644556
Effective search space used: 644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_l04.g1 MSMg01no101_l04.g1 CHROMAT_FILE:
MSMg01no101_l04.g1 PHD_FILE: MSMg01no101_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:00 2005
(517 letters)
>mm_chr2_18303698_18304614
Length = 917
Score = 760 bits (393), Expect = 0.0
Identities = 467/521 (89%), Gaps = 49/521 (9%)
Strand = Plus / Minus
Query: 1 tttcaaatttaaggccagcctagtctgtctacatagtgagttccaagttagccaggctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tttcaaatttaaggccagcctagtctgtctacatagtgagttccaagttagccaggctaa 827
Query: 61 aaagcagtaccctttcttaacatatatatatatatatatatatatatatatatatatata 120
||||||||||||||||||||||||||||||| | ||
Sbjct: 826 aaagcagtaccctttcttaacatatatatat-------------------------t-ta 793
Query: 121 ttctctctctctctctc----tctctctctctttctctctctctctctctcacacacaca 176
||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||
Sbjct: 792 ttctctctctctctctctctttctctctctctctctctctctctctctctctctcacaca 733
Query: 177 cacatacacaccctatatacacacacatacatattggcttttaaatagtaatttgcatta 236
||| |||||||||||| |||||||||||||||| |||||||||
Sbjct: 732 cac---------------acacacacatac----tggcttttaaatagtattttgcatta 692
Query: 237 acagttaatgacttgagttgatttatggcattaaaggacaataagagaaatgtagaaaag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 acagttaatgacttgagttgatttatggcattaaaggacaataagagaaatgtagaaaag 632
Query: 297 ccagaagttgtaaatttttaagtagttaattgtattgtatgctatttttgtatggctctt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ccagaagttgtaaatttttaagtagttaattgtattgtatgctatttttgtatggctctt 572
Query: 357 ttatttacactaaaactggaaattgtgaaatttttttcttttgtagttaggtgtatctta 416
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 571 ttatttacactaaaactggaaattgtgaaatttttttcttttgtagttagttgtatctta 512
Query: 417 tgatatttttgtatgggtcttttatctacagtaggaaataggcctcctggtttaagtaaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgatatttttgtatgggtcttttatctacagtaggaaataggcctcctggtttaagtaaa 452
Query: 477 gcatactaatgtaaatatttgatgaagtacaactgagtacc 517
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcatactaatgtaaatatttgatgaagtacaactgagtacc 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
