BAC Information

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BAC

Clone NameMSMg01-101L10
Chromosome2 (Build37)
Map Location 106,837,437 - 106,896,973
singlet/doubletdoublet
Overlap geneLOC383739, Fshb
Upstream geneDph4, LOC668765, Dcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik
Downstream geneKcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101L10.T7 (MSMg01no101_l10.b1)MSMg01-101L10.TJ (MSMg01no101_l10.g1)
ACCAG317054AG317055
length720716
length of high quality
(start - end)		648 (73 - 720)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no101_l10.b1 PHD_FILE: MSMg01no101_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:02 2005CHROMAT_FILE: MSMg01no101_l10.g1 PHD_FILE: MSMg01no101_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,837,437 - 106,838,081)(106,896,682 - 106,896,973)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCCATGATAGCAAAGGATGAAAGCACTCAGTCAAAGGGGAATGT
AGTGAGTGAGACTTCAGAAGTTCCAGGTTGCAAAGCCTGCCTGCAAATTT
AAGAAAACCAACAACCACCTTAAGGGCTTGTGGATAGTCATTGTGCTACT
ATGTTCTTTCAGAAAGATTTAGAGAGGTGATTTTTTTTTTTTCCTTTTGC
CAATGTCCACAGATCTGTTGCCGTCCGACGTCAGGGAGATGGCTCAGATC
GAAGGTAAAGGAGGAAGAACCAGGCTTTCCTCGGGTCAGGGTGAGAGGTA
TGGATGCTAATGTTCCATAGAGGGAAGTACTCGCCCTCTTCCTACTGTCC
TAGAGAGTCCCTGTTTCAGCACCAGATGTGACCATCTGGATCCCAATGGT
TTTGTATGATGGAGGTATCAGGGTTCAGAGGAAACAGGAGCAAGGTCTTG
GATGGGGTTGAGCTCAGCAGGAATGAATGACCCAGGAGAGATCAGGTAAA
CTCTCTGGCTTTTTCTTGGAAAAGAAAAATCTGTTCTGGAACTTGTATCA
ATTCATCTCAAGCTTCAGAGCTTGAGTTCATTAGCATCTTAGATACAGCA
CCAGTACACCCAGTGGCAGGAAAAGCTGAACACCCACGTTAAATTTGTCC
TGACTACTTGTTGTCTGAGG

ATCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGAGAAACTCAATGGCTTCCTTA
AGAGAAAGAAAGGTGAGAAATATCCGAGAAATGCTGATGAAGCTGGCTGA
GGAAAGCTGGCCCCCACAAGGTTAGGCTGCTTAACTCCTCTGAAACGTGT
GGAGTATTGAGACAGGATCAAACATCTATGGATTGTTCCAGGCAGACAGG
ACAGGAGGTAGTAACCAAGCTCAGAATTTCCCAAGGTATTGCCACCAAGT
TCTTTAGTTAAAGGAAAAAAATTAATTTGGAACTGTGAATATTAGTCCAC
ATTTATTCATTACTTTAAGAACCGATCACATGCTATTAGAATTCTTCAAA
ACTCCCTGATCTCACCAGCTTTCCCTCGCATGCAATGAGAGAAGGTTTTG
AAGTGGGTTTCAAAGAAATTTCAGCGATTAATTAAATACATTTAGCTTGC
CTACAAACACCTCTGTATAAATTAATGGTTATATAAAATGAACCATGAAG
GGAAAAACTTCTGTTTTCTAGGATCCCTACTTCTCTTTTGCCTATCTATG
GTCTCCCACAGCTTTTGTTCCTTTTCCAATACTCCTGAGTTGAATTCCTT
TTAAGAAATTAATCCTTTTACTCAGGTACTTATTTCCCAGTTATGACGCC
TGACTACACTATTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_l10.b1 MSMg01no101_l10.b1 CHROMAT_FILE:
MSMg01no101_l10.b1 PHD_FILE: MSMg01no101_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:02 2005
         (648 letters)



>mm_chr2_106837237_106838281
          Length = 1045

 Score = 1143 bits (591), Expect = 0.0
 Identities = 633/649 (97%), Gaps = 5/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaagcactcagtcaaaggggaatgtagtgagtgagacttcagaagttccaggttgca 60
           ||||||||||||||||||||||||||||    ||||||||||||| ||||||||||||||
Sbjct: 201 atgaaagcactcagtcaaaggggaatgt----agtgagacttcaggagttccaggttgca 256

                                                                       
Query: 61  aagcctgcctgcaaatttaagaaaaccaacaaccaccttaagggcttgtggatagtcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagcctgcctgcaaatttaagaaaaccaacaaccaccttaagggcttgtggatagtcatt 316

                                                                       
Query: 121 gtgctactatgttctttcagaaagatttagagaggtgattttttttttttccttttgcca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 317 gtgctactatgttctttcagaaagatttagagaggtgatttttttttttttcttttgcca 376

                                                                       
Query: 181 atgtccacagatctgttgccgtccgacgtcagggagatggctcagatcgaaggtaaagga 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atgtccacagatctgttgcggtccgacgtcagggagatggctcagatcgaaggtaaagga 436

                                                                       
Query: 241 ggaagaaccaggctttcctcgggtcagggtgagaggtatggatgctaatgttccatagag 300
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 437 ggaagaaccaggcattcctcgggtcagggtgagaggtatggatgctaatgttccgtagag 496

                                                                       
Query: 301 ggaagtactcgccctcttcctactgtcctagagagtccctgtttcagcaccagatgtgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggaagtactcgccctcttcctactgtcctagagagtccctgtttcagcaccagatgtgac 556

                                                                       
Query: 361 catctggatcccaatggtt-ttgtatgatggaggtatcagggttcagaggaaacaggagc 419
            |||||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||
Sbjct: 557 gatctggatcccaatggttgttgtacgctggaggtatcagggtttagaggaaacaggagc 616

                                                                       
Query: 420 aaggtcttggatggggttgagctcagcaggaatgaatgacccaggagagatcaggtaaac 479
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaggtcttggatggggctgagctcagcaggaatgaatgacccaggagagatcaggtaaac 676

                                                                       
Query: 480 tctctggctttttcttggaaaagaaaaatctgttctggaacttgtatcaattcatctcaa 539
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctctggccttttcttggaaaagaaaaatctgttctggaacttgtatcaattcatctcaa 736

                                                                       
Query: 540 gcttcagagcttgagttcattagcatcttagatacagcaccagtacacccagtggcagga 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gcttcagagcttgagttcattagcatcttagatacagcaccagtacacccagtggcagga 796

                                                            
Query: 600 aaagctgaacacccacgttaaatttgtcctgactacttgttgtctgagg 648
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaagctgaacacccacgttaaatttgtcctgactacttgttgtctgagg 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1045
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1035
Effective search space:   660330
Effective search space used:   660330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no101_l10.g1 MSMg01no101_l10.g1 CHROMAT_FILE:
MSMg01no101_l10.g1 PHD_FILE: MSMg01no101_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:02 2005
         (292 letters)



>mm_chr2_106896482_106897173
          Length = 692

 Score =  528 bits (273), Expect = e-154
 Identities = 288/293 (98%), Gaps = 2/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgagaaactcaatggcttccttaagagaaagaaaggtgagaaatatccgagaaatgct 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 492 aatgagaaactcaatggcttccttaagaaaaagaaaggtgagaaatatccgagaaatgct 433

                                                                       
Query: 61  gatgaagctggctgaggaaagctggcccccacaaggttaggctgcttaactcctctgaa- 119
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 432 gatgaagctggctgaggaaagctggcccccacaaggttaggctgctcaactcctctgaag 373

                                                                       
Query: 120 acgtgtggagtattgagacaggatcaaacatctatggattgttccaggcagacaggacag 179
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 a-gcgtggagtattgagacaggatcaaacatctatggattgttccaggcagacaggacag 314

                                                                       
Query: 180 gaggtagtaaccaagctcagaatttcccaaggtattgccaccaagttctttagttaaagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaggtagtaaccaagctcagaatttcccaaggtattgccaccaagttctttagttaaagg 254

                                                                
Query: 240 aaaaaaattaatttggaactgtgaatattagtccacatttattcattacttta 292
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaaaaaattaatttggaactgtgaatattagtccacatttattcattacttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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