BAC Information

Click to search

BAC

Clone NameMSMg01-102C20
Chromosome2 (Build37)
Map Location 77,502,435 - 77,502,600
singlet/doubletsinglet
Overlap geneZfp533
Upstream geneFkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906
Downstream geneBC003993, LOC667920, OTTMUSG00000016703, LOC383717, LOC100040476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102C20.T7 (MSMg01no102_c20.b1)MSMg01-102C20.TJ (MSMg01no102_c20.g1)
ACCAG317395AG317396
length717706
length of high quality
(start - end)
122 (78 - 199)166 (67 - 232)
definitionCHROMAT_FILE: MSMg01no102_c20.b1 PHD_FILE: MSMg01no102_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:41 2005CHROMAT_FILE: MSMg01no102_c20.g1 PHD_FILE: MSMg01no102_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCGCTAAACGACTCCTATATTCAGAACAAGGCGGATTCAATACT
CATTCAAAACAGAGAACTGAGTCCCAAAGTTATCCTCTGATTTCACATAT
ACCGTGTCATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTC
TCTCTCTCTCTCTCTCACATACACACACACACAATAACTTTTTTAAAAGG
AGCATTTTAGAGGGTGATGCTAGTTAAGAGCATGGCCAGAACTCAAGCCT
CCCCTGGGAGGACACTTCTTTCTTCATCACGGATCAGTGTAGCCATTCCA
AGGCAATCTTTTTATTTTTCCTAGTGGAGACTGTTGTGAAAGTGAAATAT
GATTTCTAACACACTGTGAAGGGTTGCGCAGTACCCACACCTGTAATGAG
GCAAATGAGATACCCGATGTGAGATATTTACCCACCATTCAATGTTGCCT
CTGTGCTTCCATGCGATTTCTGTGTATCCTGTCTCTCCTGATATGCCTTG
AGCCATCCGCTTTGTTACTCTCCCTGTACCTTCCTTTTGTACCTTCTCAC
CGAGTATAGTCATAGCTCCAATCCCATACTCTGGCCTTCACCATTCTCCA
ACCTTGAGCTCTCTCCATATTTGTCTTCTCATATTGGCCTCTTCTCTCTT
GGCTTTCCTACTTTTATTCCATGTTCTCCCCTATTTCCGCTCATATTACA
TAATGCTTCCCCATCCN
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCACAGAGGTGGAATTCACAGATGTGGAAAGCTAACAA
TACTAGCTAAAATCCAGTAGCACTGAATGGCTATTTATAGATTTTAAAAA
GTTAGTGTGACTCTTCTTTTAAATTAGGATGTTCTCAGATGTGGGACCAT
CTACTTGCCTTAAAGCAACTCTGTGAATAAGGATAGGAAGACAGATAATG
GCAGTCAATCAATGGTGTCCATACTTGGTATAGCACCCACAGAAAGACTG
CACCAAGGACCATTTATTATCCAAAGACCCCAACAGTGTCCACATTGTCC
ATACTTCATCGAACTGCAAAATTTCAGTGCTTTCAAGACCTCTCAGGATT
GAGGAGTCTCTAATGAATTGCGATTAAATGTCATACCGCAGGGAGTCAGA
CTCTAATTTTTTTTCATGAACATGAGTATGCGTACCATTCTCTCTATAAA
TAACTAATTTTGTAGAACAAAACATATATTGGCACTACTTATAATTTAGC
TAGCTCTGACTACAAACCTTTTGACTTCTGGTGAGTTCTACTGGAACTTA
CACTAGGAGATCACCATTTGTATTAACGTAAGTTTGATCCTTGCTATAAA
AATGCATATCATCTCTGTCTTTACTCTGGGAAATGGAAACGTTATTCACA
AATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_c20.g1 MSMg01no102_c20.g1 CHROMAT_FILE:
MSMg01no102_c20.g1 PHD_FILE: MSMg01no102_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:41 2005
         (166 letters)



>mm_chr2_77502235_77502800
          Length = 566

 Score =  313 bits (162), Expect = 3e-90
 Identities = 165/166 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggtggaattcacagatgtggaaagctaacaatactagctaaaatccagtagcactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggtggaattcacagatgtggaaagctaacaatactagctaaaatccagtagcactga 260

                                                                       
Query: 61  atggctatttatagattttaaaaagttagtgtgactcttcttttaaattaggatgttctc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acggctatttatagattttaaaaagttagtgtgactcttcttttaaattaggatgttctc 320

                                                         
Query: 121 agatgtgggaccatctacttgccttaaagcaactctgtgaataagg 166
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgtgggaccatctacttgccttaaagcaactctgtgaataagg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)