BAC Information

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BAC

Clone NameMSMg01-102D08
Chromosome2 (Build37)
Map Location 125,988,223 - 125,988,518
singlet/doubletsinglet
Overlap geneDtwd1
Upstream geneSlc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7
Downstream geneAtp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102D08.T7 (MSMg01no102_d08.b1)MSMg01-102D08.TJ (MSMg01no102_d08.g1)
ACCAG317417AG317418
length677747
length of high quality
(start - end)
297 (41 - 337)143 (78 - 220)
definitionCHROMAT_FILE: MSMg01no102_d08.b1 PHD_FILE: MSMg01no102_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:43 2005CHROMAT_FILE: MSMg01no102_d08.g1 PHD_FILE: MSMg01no102_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCCAANAGGAGCCGCGGAATTCTATATTTTCCGAAGTAGATACTAAAAT
TTTGAAAACTGCAGAAAAATACATGAAATTGGAGAACACTGTATGAAGTA
AGGTCACCAGACTGAGAAAGAGTCCCCCAATTATTCCTGAGGAGGCAGAG
GAAGCAGGAACTTAATTAGTACCTGTAGGGATTTGCTTTTCATGGTTATA
AACTAGCACAGAAGTGAAATGCATGCTTTCGATGGGAAATAGAAAGGAGT
AACAAATCTTTTGTACAAATCTCATTTTAGGCAAACTTATATCAAGCTGA
CTTTGAATAGTAGCAGAATAATTCTATTTATAGGTTTTTCAAGGACTTTT
ACTTGTGTTCTTTCATTTGAACCTAGTAATTACCATATAAGGTAGTAATA
AGAAAAATATACGAGACAAATCTTCAAGCTTTTGAGGAGTGACTTGCTGC
ACTAAGGGGACCGAGGGGCTGTGGCAACTGTGACTTCTTGTTCATCCAAA
GTACAGGGCAGCTTGGATCATCATGTACACCGCAGCCATGAATTCTTCAA
AGTCTTACAGCTCACTGGTACAAACTACTCCATTAGCTAACCAGTTAGCT
AAGTCCCTGTGATGTACTCTGTACTTCCTTTAACTTGGAATTGATTAACA
GACTGTAGTATGCCTTTTCTTGAGCGA
CGATGAAGTGCGAGAGCTGGCGAACGCTGGCCTCCTXXXXXXXXXXXXXX
XXXXXXXXXCTTTCATAAAATTTGTGAAATACTCAGGAGTGGTATAGCTG
GGCCACATGGTATCTATTTCCAGGTTTTTGAGGAACTTCTAGAATGACTC
CCCATTTGAGAGTGCCAGCATTCATTCCAGTAATGAGTAAGTGCTCCCCT
TTCTCTATATCCACACCAGCAGTGGCTGGAATTCGGCTTTTGCGTTTCAG
CCATTCTGACTAGGATAATACGAAATTCCAAAGTTGCTCTAATCCTCGTC
TACCTCACGGATAAACATCTTTTTTTGAATACACATACCACTACAACACA
CCGACAGACTTTTTTTCTCCCCCCCCCCCCCATCTGAAACATAAGGAAAG
AATGTATGAGCACTTAGCTCTGATAAAAAAAATATACGCTTTTTTGTGGC
GTAATCTTTCTTCTATTCTTTTCCTTTCTTACGCTTCGTTTTTCTTTCCT
TTCTTTCTTTTTTTCTCCTCTTTTCTTTCCCCCCTTACTCCTTCCCTACT
TTTTTCTTTCTTTCTCTTCCAATGACTACTATACTTCCATACTTTATTTA
TTTAATCTTCCTTCCTCTACTTCTTGATCCCACTACACTATACCCATCTC
TTTATCTATCTAACTATTCTTTCTTTTCAATATTTATCCATACCTCCCTC
CACTCTTACTCCCCCCCTTCTTTCTCCCCACCTCATCCTCTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_d08.b1 MSMg01no102_d08.b1 CHROMAT_FILE:
MSMg01no102_d08.b1 PHD_FILE: MSMg01no102_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:43 2005
         (297 letters)



>mm_chr2_125988023_125988718
          Length = 696

 Score =  505 bits (261), Expect = e-147
 Identities = 288/297 (96%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactaaaattttgaaaactgcagaaaaatacatgaaattggagaacactgtatgaagta 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atactaaaattttgaaaattgcagaaaaatacatgaaattggagaacactgtatgaagta 437

                                                                       
Query: 61  aggtcaccagactgagaaagagtcccccaattattcctgaggaggcagaggaagcaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aggtcaccagactgagaaagagtcccccaattattcctgaggaggcagaggaagcaggaa 377

                                                                       
Query: 121 cttaattagtacctgtagggatttgcttttcatggttataaactagcacagaagtgaaat 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttaattaggacctgtagggatttgcttttcatggttataaactagcacagaagtgaaat 317

                                                                       
Query: 181 gcatgctttcgatgggaaatagaaaggagtaacaaatcttttgtacaaatctcattttag 240
           ||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 316 gcatgcttttgatgagaaatggaaaggagtaacaaatcttttgtacaaatttcattttag 257

                                                                    
Query: 241 gcaaacttatatcaagctgactttgaatagtagcagaataattctatttataggttt 297
           |||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gcaaacctaaa-caagctgactttgaatagtagcagaataattctatttataggttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 696
Length adjustment: 9
Effective length of query: 288
Effective length of database: 687
Effective search space:   197856
Effective search space used:   197856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)