BAC Information

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BAC

Clone NameMSMg01-102J21
Chromosome2 (Build37)
Map Location 151,460,925 - 151,461,392
singlet/doubletsinglet
Overlap genenone
Upstream geneAcss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph
Downstream geneLOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102J21.T7 (MSMg01no102_j21.b1)MSMg01-102J21.TJ (MSMg01no102_j21.g1)
ACCAG317712AG317713
length700781
length of high quality
(start - end)
466 (70 - 535)103 (211 - 313)
definitionCHROMAT_FILE: MSMg01no102_j21.b1 PHD_FILE: MSMg01no102_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:16 2005CHROMAT_FILE: MSMg01no102_j21.g1 PHD_FILE: MSMg01no102_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAACGACTACTATAGTTCGAGATACGCGGAATTCTCC
TGAGCTTTTCATAGAAGTGATTGAGAAGAGAATCAGTGTTTAGGAATAAG
GGAAATTGCAACAAATGAGGGTCACAAACATAAAACAAAATAAAATTATT
CCAAAGAAATCAGTAATTTTATTTTGCACTAATTAGGAAACATTACATTT
AGATTTTTTTTTTCAGTTTCAAAACCAGTTTTTATTCCAGTTCTGGGCAA
GCACCTTGCTCTCACTGAATGCAGCAAGAAAATTTGAACAAAATACATAC
ACATGGGAGCTATGTGAGTATTCTTAAGGGAAACCATAAACAGGGCTAAC
TAAAGAAGGCTGTCAAGGTTTAAGTCACTGGGATGGCAGAACTTAGCTTT
TTGGTTTTTTTCCCCTTGGATCTCTTCCAGCCTGGGCTTCAGCCAGCAAA
CTCTGAAACTGGGAACCAGCACGAGAAATCTTCCAAACAACCCTTTCCGC
TCCGCCTCGAGATCCAGGAGAGGAGGCATCTGATGCTCAGTATGTGTGGG
GGAATCATTTCTCTATTCAGATCCTTCTCCATTTTCTCACAGTTCCGTTC
TCAGGCAATGCTGCAGTGGCTGTTAGAACACAAGGAAATGGCAGGTGGAA
GAGGAGTTACTCCATCGGACAAAGTGTGTCCCTGAAGGAGGGGAACCCCG

TTTTTTTTTTTNTNNNTTTTTTTTTTTTTTTCCTCTCTCTCCTTGTATAA
ACATCATCGATGCAGTGGGTGGCCTGGCGGCCGCCTGGTACCCACGAGGG
GGTGACCTATAGTATTTTCCGCAGAAATCTGCCCTCCCTGATATGGTTAC
CACCATCTCAAAACCAGAGCCGCTCCCCTTACCCACACACCTCTCACTGA
GACAAGATGGAAACTATGGGGATCAGAGGAAGGGACAAGAGCCCCTCATG
GCAGCTTCTCACCAGCTGAGGAGCCATAATTCCAGCACACACTTGTTACA
AAGGCTGCCTCTGGGAAATAATATTCCTTTTGCATTTAGATAAAAGTAAC
AACGAACCAGGCTTATAGCCAAATTGTTTTTGGCCCTGAGTTGGGACTCA
TCCCGATTCCCCAGGCAGCTAACCCGCCTTTCCATAATGCATTCTGTCTT
CCTGCCTCCTGGATATCTTATCAATGGCAATCCTGACAGGTGCGTTAATT
AGGGTTTCTATTGCTGTGACGATAGAACGCGGTCAACAGCAACCTGCTAA
AAAACGGAATTAGTTTTGCTTACCCTACCTTATCGTAGTTCACCATGGAA
TGGTAGTTGGCGTCAACAACCTTTAAGGAAGGTACCTGAATGTAAAGGCC
CCAGATACGACTGACTGCTTAAATGGCCTTGCCACCCTAAGCATTTGTTC
TACACTGCATTACTTACCTCCATTGTTATTCCTAACACTTCCAAGGCAAG
CACCCGCCCCCTAGTAATTCACGTGCATCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_j21.b1 MSMg01no102_j21.b1 CHROMAT_FILE:
MSMg01no102_j21.b1 PHD_FILE: MSMg01no102_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:16 2005
         (466 letters)



>mm_chr2_151460725_151461592
          Length = 868

 Score =  855 bits (442), Expect = 0.0
 Identities = 461/468 (98%), Gaps = 2/468 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgagaagagaatcagtgtttaggaataagggaaattgcaacaaatgagggtcacaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgagaagagaatcagtgtttaggaataagggaaattgcaacaaatgagggtcacaaac 260

                                                                       
Query: 61  ataaaacaaaataaaattattccaaagaaatcagtaattttattttgcactaattaggaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaacaagataaaattattccaaagaaatcagtaattttattttgcactaattaggaa 320

                                                                       
Query: 121 acattacatttagatttttttttt--cagtttcaaaaccagtttttattccagttctggg 178
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 321 acattacatttagattttttttttttcagtttcaaaaccagtttttattccagttctggg 380

                                                                       
Query: 179 caagcaccttgctctcactgaatgcagcaagaaaatttgaacaaaatacatacacatggg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 caagcaccttgctctcactgaatgcagcaagaaaatttgaacaaaatacatacacgtggg 440

                                                                       
Query: 239 agctatgtgagtattcttaagggaaaccataaacagggctaactaaagaaggctgtcaag 298
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 agctatgtgagcattcttaagggaaaccataaacagggctaactaaagaaggccgtcaag 500

                                                                       
Query: 299 gtttaagtcactgggatggcagaacttagctttttggtttttttccccttggatctcttc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttaagtcactgggatggcagaacttagctttttggtttttttccccttggatctcttc 560

                                                                       
Query: 359 cagcctgggcttcagccagcaaactctgaaactgggaaccagcacgagaaatcttccaaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcctgggcttcagccagcaaactctgaaactgggaaccagcacgagaaatcttccaaa 620

                                                           
Query: 419 caaccctttccgctccgcctcgagatccaggagaggaggcatctgatg 466
           ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 caaccctttccgctctgcctcgagatccaggagaggaggcatctgatg 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 868
Length adjustment: 10
Effective length of query: 456
Effective length of database: 858
Effective search space:   391248
Effective search space used:   391248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)