Query= MSMg01no102_p01.b1 MSMg01no102_p01.b1 CHROMAT_FILE:
MSMg01no102_p01.b1 PHD_FILE: MSMg01no102_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:41 2005
(275 letters)
>mm_chr2_145684575_145685249
Length = 675
Score = 520 bits (269), Expect = e-152
Identities = 272/273 (99%)
Strand = Plus / Minus
Query: 3 gaattctctttccatctcggaggaaaatattttaactaaagttaaactcatactgattct 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaattctctttccatctaggaggaaaatattttaactaaagttaaactcatactgattct 375
Query: 63 gccagagcattggggtaaagtcaaaccaggtgaactgtgtgtattgtcagccactgtgtg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gccagagcattggggtaaagtcaaaccaggtgaactgtgtgtattgtcagccactgtgtg 315
Query: 123 gtagaatcttgctgtggggtgggggtggggcgactagcagaagcagacttacagtgagtc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtagaatcttgctgtggggtgggggtggggcgactagcagaagcagacttacagtgagtc 255
Query: 183 ccacctgcctgagtaaggaccttaggtaggatgagggacatggcccacagcagtgtgtgt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ccacctgcctgagtaaggaccttaggtaggatgagggacatggcccacagcagtgtgtgt 195
Query: 243 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 275
|||||||||||||||||||||||||||||||||
Sbjct: 194 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no102_p01.g1 MSMg01no102_p01.g1 CHROMAT_FILE:
MSMg01no102_p01.g1 PHD_FILE: MSMg01no102_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:41 2005
(310 letters)
>mm_chr2_145537979_145538690
Length = 712
Score = 569 bits (294), Expect = e-166
Identities = 307/312 (98%), Gaps = 2/312 (0%)
Strand = Plus / Plus
Query: 1 tgtgtgttgcagatggagacctgagacagaaacttctgaacttccatcgggaaagatcaa 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tgtgtgttgcagatggagacctgagacagaaacttctgaacttccatctggaaagatcaa 260
Query: 61 atgcgtgagccttcagagctccgcagcagacaggcccgagctgaagagag--gagagaga 118
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 atgcgtgagccttcagagctccgcagcagacaggcccgagctgaagagagaggagagaga 320
Query: 119 gatgctggcctgacaggtaggtaaaactgagatgctgaaacccaggattcatcaacccag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgctggcctgacaggtaggtaaaactgagatgctgaaacccaggattcatcaacccag 380
Query: 179 ggaggaagttcatttccagccctgtcattgaggttgggattttattctgtgtcagctttg 238
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ggaggaagttcattttcagccctgtcatggaggttgggattttattctgtgtcagctttg 440
Query: 239 gaaggttgccatggaaactgatgccattcatgatgtagcaggatcagagccacccaagaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggttgccatggaaactgatgccattcatgatgtagcaggatcagagccacccaagaa 500
Query: 299 tcaggacatttt 310
||||||||||||
Sbjct: 501 tcaggacatttt 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 712
Length adjustment: 9
Effective length of query: 301
Effective length of database: 703
Effective search space: 211603
Effective search space used: 211603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
