Query= MSMg01no103_a04.b1 MSMg01no103_a04.b1 CHROMAT_FILE:
MSMg01no103_a04.b1 PHD_FILE: MSMg01no103_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:46 2005
(616 letters)
>mm_chr2_6660432_6661447
Length = 1016
Score = 1176 bits (608), Expect = 0.0
Identities = 614/616 (99%)
Strand = Plus / Plus
Query: 1 ataggatgttcctagtgtgtaattatttaaaataattcattaattgcaatgactgtattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataggatgttcctagtgtgtaattatttaaaataattcattaattgcaatgactgtattg 260
Query: 61 taagataacctgagaaagtgtcatgaactggtggggttttgatgctagccagacccaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagataacctgagaaagtgtcatgaactggtggggttttgatgctagccagacccaatt 320
Query: 121 ctaaattaacagtatgtagcagcagccttggcagtttaagcctgggcaaattactcagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaattaacagtatgtagcagcagccttggcagtttaagcctgggcaaattactcagtc 380
Query: 181 ccacatacctcagctatgggatgagcacaggaggattctctgtgttctcttacgattaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacatacctcagctatgggatgagcacaggaggattctctgtgttctcttacgattaga 440
Query: 241 caagaaatgttgcatgttttacagaactgggaaagagtagggactcaatgctttcctatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagaaatgttgcatgttttacagaactgggaaagagtagggactcaatgctttcctatt 500
Query: 301 tcaagaaataaaaaatctggaaaattttaaaaaaagaatttatattaaatgctgtttttc 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tcaagaaataaaaaatctggaaaattttaaaaaaagaatttatattaaatactgtttttc 560
Query: 361 atactgattaaaaaaacagaatacaagtatacatacatttaaaaaatagaaccctcatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atactgattaaaaaaacagaatacaagtatacatacatttaaaaaatagaaccctcatag 620
Query: 421 ctttaactgcatctactatgctaaacaaaacctaattgtgttagtcacaattaagaatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttaactgcatctactatgctaaacaaaacctaattgtgttagtcacaattaagaatta 680
Query: 481 cacaattacagaagtgagaggaataagtagttcccacccacctcggaggtccgcctaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacaattacagaagtgagaggaataagtagttcccacccacctcggaggtccgcctaggc 740
Query: 541 tctaagtcctatctgcttccctgtggttgttccacattcaggctgaacagagttcactgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctaagtcctatctgcttccctgtggttgttccacattcaggctgaacagagttcactgt 800
Query: 601 tccaccatgtgctctt 616
||||| ||||||||||
Sbjct: 801 tccacgatgtgctctt 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_a04.g1 MSMg01no103_a04.g1 CHROMAT_FILE:
MSMg01no103_a04.g1 PHD_FILE: MSMg01no103_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:47 2005
(288 letters)
>mm_chr2_6800179_6800866
Length = 688
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%)
Strand = Plus / Minus
Query: 1 actatgtagcccaggcctgatcctcccaactcagtctgtgcagtgggatcccagggctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 actatgtagcccaggcctgatcctcccaactcagtctgtgcagtgggatcccagggctat 324
Query: 61 gccaccaggctcagtgagatttgccattttaaaaagtaattgtttgtattgtttttaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gccaccaggctcagtgagatttgccattttaaaaagtaattgtttgtattgtttttaatt 264
Query: 121 atgtctacggtgtatctaggtatgttcatgtgagagagttatggggatatgtgttgtgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgtctacggtgtatctaggtatgttcatgtgagagagttatggggatatgtgttgtgat 204
Query: 181 tttgtattggatgcctgggagctggagttacagagggttgtaaggcctacaaatagggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tttgtattggatgcctgggagctggagttacagagggttgtaaggcctacaaatagggtg 144
Query: 241 gtgggaattgaactctggttctctgcatgagtagtatgtgatcttcac 288
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ctgggaactgaactctggttctctgcatgagtagtatgtgatcttcac 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
