BAC Information

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BAC

Clone NameMSMg01-103M17
Chromosome2 (Build37)
Map Location 59,061,438 - 59,061,680
singlet/doubletsinglet
Overlap genePkp4
Upstream geneAcvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
Downstream geneLOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103M17.T7 (MSMg01no103_m17.b1)MSMg01-103M17.TJ (MSMg01no103_m17.g1)
ACCAG318575AG318576
length675725
length of high quality
(start - end)
242 (78 - 319)243 (70 - 312)
definitionCHROMAT_FILE: MSMg01no103_m17.b1 PHD_FILE: MSMg01no103_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:49 2005CHROMAT_FILE: MSMg01no103_m17.g1 PHD_FILE: MSMg01no103_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCG
GAATTCCCTCTATGTTGCCGTGAGAGATGGGACTTTGTTCTTTTAATGGC
TGGATACCATGCCATTGTGTAATACCACATATTCTTTATCCATTCATCAG
CTGGTGCACACTTCTTGTTTCTCCCTCTTGGCTATCATGACTAGCAGCAC
CACGATGAACACGGGCACGCAGGAGTCTATACAATATTGATTTCATCCCT
TCAGACACAGGAGTAGGACTGCTGAACCGTATGTCAGTTCCATTTTTAGT
TCCTCGAGGAGCCTTCGTACTTCTCTGTTTGAACGCATCCATTCACATCC
CCATCAACAGGGGGTAAGCGTCCCTTTCTCCTCACCTCCGNCGTTTTTCA
TAATCTAAGGGCTGATCCCCCTTTTGTTTTCTCCAAAAGACTTCCCCCAC
TATTGGCAAGGGTGAAAAATCCATTGGCGGTTTTTGAATCAGGAATTTTC
CCTGGGGAATTTCAATAAAAAGGGGTTAAAAGGGGGGGTGCTGGGTCCAT
TTTTTCTCTTAAGAAAAGGCCCTCTTTTTAAATATAAACGGGGCTCTTTC
AAAAAGCCGGGGTTTAATTTTTTTCTCCTCGCATTCAAAAAATTTGGAGA
ATCCTCCTACCCCATTCCCACAAAA
TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATGATGGGAGACGATTTATTTTTTGTTTTA
AACACTGTTTCTTATGAACACAAATCCTTAATACTTGAAAAACCTTTAAA
TTGCCCCTTAAAAGCCTATGTAAGGTTGTTGGGTGAGGGGCGCAAAGGCC
AAGGGACCCTACAAATGCACTGACTGGATGTGAGAAGAGTTGGAGGCTCG
GCCGCCACTTCAGGGTCACTGCTAGAGCTGGATGGGGGAAAGCAGTGCTC
TGTCCAGGCTAGCACTGTTGTGTGATGGCCGAGCCCTGCGCTGCTGCATA
GATGAATAGATGGCTGGTTCTTCTCTCTCTTCTGCCGCCACTGCTGTTAT
TAGAAATACTGTCACTACTGCTGGTGACAAATGAAAAAAATTACAAAGTA
GTTTTAACACCAGTGTGGCATAAGAATAAATGGCCTCTGGAGTCAGGGCC
CAGTGAGAGTCCGTGCTGTGTGCAAGATGACTGTAGCCTTGGCTGTCCTG
GAATTTGCTATTTAGACCAGGTTGGCTTTGAATTTCACAGAGATCTGCCT
GCCTCTGTTATCTGAATGCCGGGATTAAAGGCGTGTGTCCCATACCCATC
TTGTCTGTGTTCTTACTCCGATCCTTTGAGCTCATATACCATATCTCCTG
CTGTTTTCATAGCCCCTGAATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_m17.g1 MSMg01no103_m17.g1 CHROMAT_FILE:
MSMg01no103_m17.g1 PHD_FILE: MSMg01no103_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:49 2005
         (243 letters)



>mm_chr2_59061238_59061880
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgatgggagacgatttattttttgttttaaacactgtttcttatgaacacaaatcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgatgggagacgatttattttttgttttaaacactgtttcttatgaacacaaatcctt 260

                                                                       
Query: 61  aatacttgaaaaacctttaaattgccccttaaaagcctatgtaaggttgttgggtgaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatacttgaaaaacctttaaattgccccttaaaagcctatgtaaggttgttgggtgaggg 320

                                                                       
Query: 121 gcgcaaaggccaagggaccctacaaatgcactgactggatgtgagaagagttggaggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgcaaaggccaagggaccctacaaatgcactgactggatgtgagaagagttggaggctc 380

                                                                       
Query: 181 ggccgccacttcagggtcactgctagagctggatgggggaaagcagtgctctgtccaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccgccacttcagggtcactgctagagctggatgggggaaagcagtgctctgtccaggc 440

              
Query: 241 tag 243
           |||
Sbjct: 441 tag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)