Query= MSMg01no104_d18.b1 MSMg01no104_d18.b1 CHROMAT_FILE:
MSMg01no104_d18.b1 PHD_FILE: MSMg01no104_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:26 2005
(139 letters)
>mm_chr2_62933412_62933950
Length = 539
Score = 261 bits (135), Expect = 1e-74
Identities = 138/139 (99%)
Strand = Plus / Plus
Query: 1 ttattatcatgagaattaagcaaatgttcagttttgatcatttctctaagatacataatt 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ttattatcatgagaattaagcaaatgttcagttttgatcgtttctctaagatacataatt 260
Query: 61 acttccaataaactcttttaagactaagcaagagcctttttcttccctcctgcttcggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttccaataaactcttttaagactaagcaagagcctttttcttccctcctgcttcggtt 320
Query: 121 attttccctcttattcact 139
|||||||||||||||||||
Sbjct: 321 attttccctcttattcact 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space: 69561
Effective search space used: 69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no104_d18.g1 MSMg01no104_d18.g1 CHROMAT_FILE:
MSMg01no104_d18.g1 PHD_FILE: MSMg01no104_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:26 2005
(476 letters)
>mm_chr2_63049040_63049909
Length = 870
Score = 766 bits (396), Expect = 0.0
Identities = 451/476 (94%), Gaps = 12/476 (2%)
Strand = Plus / Minus
Query: 1 attctacagtaatatgcagaggccaaaatatcctcaggacagcaagtctttatgaaataa 60
||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||
Sbjct: 690 attctacagtaatatgcag------taatatcctcaagacagcaagtccttatggaataa 637
Query: 61 aaaggtggggagtgttcaggatgggcaagtggcctgagataaagaagatagcttttctgt 120
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 636 aaaggtggggagggttcaggatgggcaagtggcctgcgataaagaagatagcttttctgt 577
Query: 121 ttgctaatgttttagaaaacaggtttcagagtaaaacaggcatgtgcaaaatatcagatg 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttgctaatgttttaggaaacaggtttcagagtaaaacaggcatgtgcaaaatatcagata 517
Query: 181 taagataatctgatgaaacaaataataaaatataaatgatcatcagtagaaaataaatga 240
|| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 516 tatgataatctgataaaacaaataataaaatataaatgatcatcaggagaaaataaatga 457
Query: 241 tcagaataagtagcagtctctttagtactgttatagtgaacacaacctaagagagtgaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcagaataagtagcagtctctttagtactgttatagtgaacacaacctaagagagtgaac 397
Query: 301 caaccgccgacagaaagtcttactgcccgtctcagatacgagcagtacaatgacacacag 360
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 396 caaccgctgacagaaagtcttactgcccgtctcagatacgagcagtaaaatgacacacag 337
Query: 361 gagctcagtcggaatgataactcactgagccccgaaatccaagccctgcggtgtgtgttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gagctcagtcggaatgataactcactgagccccgaaatccaagccctgcggtgtgtgttc 277
Query: 421 tgcaggtcaaacaagaaaagtcctactaaacggagactataacgcatctccaggtg 476
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 tgcaggtcaaacaagaaaagtcctact------agactataacgcatctccaggtg 227
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 870
Length adjustment: 10
Effective length of query: 466
Effective length of database: 860
Effective search space: 400760
Effective search space used: 400760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
