Query= MSMg01no104_m12.b1 MSMg01no104_m12.b1 CHROMAT_FILE:
MSMg01no104_m12.b1 PHD_FILE: MSMg01no104_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:10 2005
(628 letters)
>mm_chr2_78976766_78977793
Length = 1028
Score = 1029 bits (532), Expect = 0.0
Identities = 559/574 (97%), Gaps = 10/574 (1%)
Strand = Plus / Minus
Query: 65 atatatataaaattactctcgggctcctgcaaatgagagtgccattttgcaaactttcct 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 atatataaaaaattactctcgggctcctgcaaatgagagtgccattttgcaaactttcct 670
Query: 125 gagtaatgccaagccagtgtctgctttgcaagagggacagacattgcaagaaacacctgt 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 669 gagtaatgccaagccagtgtctgctttgcaagagggacagtcattgcaagaaacacctgt 610
Query: 185 tgccctgacagttctcctcagt----------tcccccccacggagctgtaccagcacac 234
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 609 tgccctgacagttctcctcagtcccccccccgccccccccacggagctgtaccagcacac 550
Query: 235 cggcagctcatagaaagaagaattaagacacggagaaaaataaagcctacgtcctttaga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cggcagctcatagaaagaagaattaagacacggagaaaaataaagcctacgtcctttaga 490
Query: 295 cagtgtctgaatatggtccaggaatggagtcccttgaagaggattctgagtgcttgtgag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cagtgtctgaatatggtccaggaatggagtcccttgaagaggattctgagtgcttgtgag 430
Query: 355 aaaactacaagaaaccaagagaagagtcttgtgacctcagcttcttcaaaaccagagcat 414
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaaactacaagagaccaagagaagagtcttgtgacctcagcttcttcaaaaccagagcat 370
Query: 415 tgttcttggattacactttcgtgcccatcccaggtgtagtggagagaagtgagcttactt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgttcttggattacactttcgtgcccatcccaggtgtagtggagagaagtgagcttactt 310
Query: 475 cagactgttcattacagctgcctattgtaatttgtttacatgcctctatggaaaaacctg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cagactgttcattacagctgcctattgtaatttgtttacatgcctctatggaaaaacctg 250
Query: 535 gttgtgctctgcgtggcttgaccgccatgtgcagcttgcctatcatatgtggtttgctct 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gttgtgctctgcgtggcttgaccgccatgtgcagcttgcctatcatatgtggtttgctct 190
Query: 595 tgggattatactaatgtcaggccccttaagcctc 628
|||||||||||||||||||| |||||||||||||
Sbjct: 189 tgggattatactaatgtcagtccccttaagcctc 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_m12.g1 MSMg01no104_m12.g1 CHROMAT_FILE:
MSMg01no104_m12.g1 PHD_FILE: MSMg01no104_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:10 2005
(573 letters)
>mm_chr2_78832211_78833183
Length = 973
Score = 1100 bits (569), Expect = 0.0
Identities = 572/573 (99%)
Strand = Plus / Plus
Query: 1 agagaagacacctttggtttcccagttgaatagggaaaggtacagtgtgctttgaagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaagacacctttggtttcccagttgaatagggaaaggtacagtgtgctttgaagttc 260
Query: 61 aggtcaggttttcattttttccacagtatgttttattgatgtacaaacttatcacctccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtcaggttttcattttttccacagtatgttttattgatgtacaaacttatcacctccc 320
Query: 121 tcacggttagcaagataagaaatgtatggttagatacagtagcatagagggaaaaagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacggttagcaagataagaaatgtatggttagatacagtagcatagagggaaaaagtca 380
Query: 181 gttattccaagttcatttattccaaatgtaaactgctgagatcaacccaggtcatcttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttattccaagttcatttattccaaatgtaaactgctgagatcaacccaggtcatcttgg 440
Query: 241 aggatggctgtgtaagatcaaaattccaggagatcttgttcatacattctcaggtggctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggatggctgtgtaagatcaaaattccaggagatcttgttcatacattctcaggtggctg 500
Query: 301 ctcaaaagttgcaataaatgtctacatattgttttgcaaaatgcagcagttctttctttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaaaagttgcaataaatgtctacatattgttttgcaaaatgcagcagttctttctttt 560
Query: 361 aacatttttgacctttaaatttttcattaaagatgaaatgaagaagcaaattataaacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacatttttgacctttaaatttttcattaaagatgaaatgaagaagcaaattataaacac 620
Query: 421 ccttccatacaaaaacttagaaacatatctgtttgtgctcctccctcagtgtagattttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccttccatacaaaaacttagaaacatatctgtttgtgctcctccctcagtgtagattttt 680
Query: 481 ttctgaggttgattaagccttgtagatgtggaatctgcagcttagctgtagaagccttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctgaggttgattaagccttgtagatgtggaatctgcagcttagctgtagaagccttta 740
Query: 541 ctgtttttctgaggaaaacccccaaggctctgg 573
|||||||||||||||||| ||||||||||||||
Sbjct: 741 ctgtttttctgaggaaaaaccccaaggctctgg 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
