BAC Information

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BAC

Clone NameMSMg01-104N15
Chromosome2 (Build37)
Map Location 157,759,564 - 157,760,129
singlet/doubletsinglet
Overlap geneGm691
Upstream geneNdrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681
Downstream gene2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104N15.T7 (MSMg01no104_n15.b1)MSMg01-104N15.TJ (MSMg01no104_n15.g1)
ACCAG319359AG319360
length710701
length of high quality
(start - end)
465 (44 - 508)564 (74 - 637)
definitionCHROMAT_FILE: MSMg01no104_n15.b1 PHD_FILE: MSMg01no104_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:15 2005CHROMAT_FILE: MSMg01no104_n15.g1 PHD_FILE: MSMg01no104_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGTAAAGCCAGTCATATAGCATGTGCTTTCGGCTGGGTGTGGCAG
CTCATCTGACCAAGTTCACCATGTAATGTGTTTTGAGATTGATCCTTGCA
GTGTAGCAATAGCTTGTTCCTTTTTCACCACCAAGTAATATTTTATCATA
TGACTAAGCCACAGTCTGTTTACTCACTTACTGATGCTCTGTTTGTATCC
TGTTTGTAACCCTTGAGAGGAATGAACATAACTGTGCAAGGCTTCAGGCA
CACGCAGTTCTCATTGATCTTGGGTCAATACTGAGGAGCTGAGTGGAACC
ATATAACTGGTGTGTACTTTGGTTTTTAAAGCTCTGTCAAACTGCTTGCA
AAATGATGCCATTTTGAATCCCATGGCACTGTGTGAGTTCCAGGAGCCCT
GGTTTCCCGTTAGCATTTGGTCAGCCTTTTAGTGGAGCCGTGCTAACGTC
TGCACAGTGTGTGGCGGGGGTTGTCTCATACAGTTAGAATTTGTTTTTCC
TTATGACTAGCAGTATTGGGTATCTGAGTGTAAACTCATCCCCACATCTC
TCTGCTGGCCAGTTCTCATCAAATCCTCTGCCCTTGGGTGCAGGAAACTG
CGCCAGTGATGAAGAGTACAGCTCTCATGGACACAGGCCCCGTCAGGCCT
GTGTTGCATG
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGAGCATGGGCCTTACCCCCCTCTA
CAGGACAACAGGAATTTTGTGTGATCAGGTTTGACCCTGCACCCACCTGG
GGGCTTCTCTGTCTCTGCTGGGCACTAGGTACCCGTGTGGAGCTTTGTTT
CTGCAACATCCCTGGGCCGAGAGAAAGCTGGGCAGACCAAGGTTTACAAA
GCTTCTTAAGAGTGGAAAAAAAAAAAAAAGCTTTCCTGTTTCTCTGCAGA
GCGGAAGGGCTAGCCGGGCCTGGGTGCATCAACAAGGCCTGCTGGATGAT
AAAGAGCATGGCTTGAACCCCAGGAATGTGGGGTGGGGTACTGTGAGCTA
CCTTTATGTGTGGTTGCCCCAAGACTTGAGCTGTCCTTGACTGTCCCTAG
AGGGCAGGAGGAAAGCAGGCTCCTGCAGGAGTAGGGCCAACAGAGCATGT
CCCTCCTTGTCACAGCTCAGGGCCAAGAGCTCAGGCTACCATGGCGAGCC
GACTCTGGCTCTCTGTGTCAACCATCTCACCTGGGTCTTCAGGAAACTCT
ATGGGTGCTGGCTCAGAGGATCCCCAGTCGCTTGCCATAGGGCTAAACTA
CCATCCCCATGTTGGCCTCCCTCCCTCCCTCTCTCCCTCCTTTCTTTCCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_n15.g1 MSMg01no104_n15.g1 CHROMAT_FILE:
MSMg01no104_n15.g1 PHD_FILE: MSMg01no104_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:15 2005
         (564 letters)



>mm_chr2_157759364_157760329
          Length = 966

 Score =  880 bits (455), Expect = 0.0
 Identities = 539/573 (94%), Gaps = 16/573 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggagcatgggcctta-cccccctctacaggacaacaggaattttgtgtgatcaggttt 59
           ||||||||||||||||| |||||||| |||||||||||||| ||| | ||||||||||||
Sbjct: 766 aaggagcatgggccttaccccccctccacaggacaacaggagtttcgcgtgatcaggttt 707

                                                                       
Query: 60  gaccctgcacccacct-gggggcttctctgtctctgctgggcactaggtacccgtgtgga 118
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gatcctgcacccacctggggggcttctctgtctctgctgggcactaggtacccgtgtgga 647

                                                                       
Query: 119 gctttgtttctgcaacatccctgggccgagagaaagctgggcagaccaaggtttacaaag 178
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 646 gctttgtttctgcaacatccctgggccgagagaaagctgggcaggccaaggtttacaaag 587

                                                                       
Query: 179 cttcttaagagtggaaaaaaaaaaaaaagctttcctgtttctctgcagagcggaagggct 238
           ||||||| ||||||    |||||||||||||||||||  |||||||||| ||||||||||
Sbjct: 586 cttcttatgagtgg----aaaaaaaaaagctttcctg--tctctgcagaacggaagggct 533

                                                                       
Query: 239 agccgggcctgggtgcatcaacaaggcctgctggatgataaagagcatggcttgaacccc 298
           ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 532 agctgggcctgggtgcatcaacaaggcctgcttgatgataaagagcatggcttgaacccc 473

                                                                       
Query: 299 aggaatgtggggtggggtactgtgagctacctttatgtgtggttgccccaagact-tgag 357
           ||||||||||||||||||| ||||||||||||||||||||||  || |||||| | || |
Sbjct: 472 aggaatgtggggtggggtattgtgagctacctttatgtgtggccgctccaaga-tatggg 414

                                                                       
Query: 358 ctgtccttgactgtccctagagggcaggaggaaagcaggctcctgcaggagtagggccaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctgtccttgactgtccctagagggcaggaggaaagcaggctcctgcaggagtagggccaa 354

                                                                       
Query: 418 cagagcatgtccctccttgtcacagctcagggcc------aagagctcaggctaccatgg 471
           ||||||||| ||||||||||||||||||||||||      ||||||||||||||||||||
Sbjct: 353 cagagcatgcccctccttgtcacagctcagggcctgtgccaagagctcaggctaccatgg 294

                                                                       
Query: 472 cgagccgactctggctctctgtgtcaaccatctcacctgggtcttcaggaaactctatgg 531
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 293 cgagccgactctggctctctgtgtcaaccctctcacctgggtcttcaggaaactctatgg 234

                                            
Query: 532 gtgctggctcagaggatccccagtcgcttgcca 564
           ||| |||||||||||||||||||||||||||||
Sbjct: 233 gtgttggctcagaggatccccagtcgcttgcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 966
Length adjustment: 10
Effective length of query: 554
Effective length of database: 956
Effective search space:   529624
Effective search space used:   529624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)