BAC Information

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BAC

Clone NameMSMg01-105I20
Chromosome2 (Build37)
Map Location 114,931,938 - 114,932,353
singlet/doubletsinglet
Overlap genenone
Upstream geneAqr, Zfp770, Atpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105I20.T7 (MSMg01no105_i20.b1)MSMg01-105I20.TJ (MSMg01no105_i20.g1)
ACCAG319876AG319877
length695682
length of high quality
(start - end)
470 (49 - 518)416 (78 - 493)
definitionCHROMAT_FILE: MSMg01no105_i20.b1 PHD_FILE: MSMg01no105_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:13 2005CHROMAT_FILE: MSMg01no105_i20.g1 PHD_FILE: MSMg01no105_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCCTATCCAGCTTCATAAGAGCTGACAAGGACAGGCAAGGT
ATGGCAGGGTCAGAGTCGCTGAGACACTAATGACTGAAATTGTGAAGGTG
AAGCCTGGGTTGTGATGCAGATCCTGTAAGATGCTGAAGTTGTCAGACCT
GTGAGACATTTGCCAAAGACAGCTGCAAACAGGGAATGGAACTAGCCCAA
GAGTGAGATTTGTGTTGCAGACAGCAATATGGGAGGGGCACAGGCACCCA
AGGCTTTTGAAACTGAAGCTGTAGTTGCCAGAAATGGAGCTACAGATATA
CTTCTTTTCAGTCTTGCTTTGATAAAGTTTTTCCCTACTCTACCCTTTTG
AAATGGGAATGCGTATTCTGTGCCATTATATACTGAAGGTATAAAATTAA
GTTTTCAGGTTTATTGGGGTCACAGCTAAGAGATTGTCTTATGTTTGGTA
AGGGTCTTTGAATTTTTTAACACTATTGAGACTGTTTAAGACTATGGGGC
ATTTGAAGTTGGAATAAAATGCATTTTCTATTGTGAGATAGCCTTGAGCC
TCTGTAGGCCAAGGGTAAAATGAAGTAGCTTGGATGAAAAATGTACCCTG
TAGGTTCCCATGTTTTGAACTTTTGGATCCCCAGTTTGGGGTTGG
CCAACGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAATGAAGCAAGCATTACAGGAT
TAAAATAAAATTATTATGACCCATAAAACTTCATTCAAAGCAGCTAATTG
ACAGGGTCTCCTGGTCCAGGACCTTGGATTTATGAAAGGATCCATCAGTG
TGCACTGGTCATCTCACCTGCTGCTCTGGACCCCACACTGTTAGAGTCTT
CATTTAACTCCTAGATGAATCTTGGGCATCTGTCTTTATCATGTAATCTT
CCACTGAAAAGCTATAAAAATAAATATGTGCTGGTTGGAAAGGGTGATGG
TGTTGAATGGTATGCCAACCATATTCTGGGCATCTGAATATGTGGTCCCT
ATTTGATGACATTGCTTGAGTATGCTTAACAGGTGTGGCTTTGTGGGAGG
AAATATGCCACTGGGGCAGGCTTTGAGGTTTCAAATTCTATGCACAGTCT
CCAGTGCATTTCCTCTGATTTATATTTGTTATTTGAGAACCGAGCTCTCG
TTTTTCAACTTTAACTGCCATGTTTGCCTCTCATCTCATCATTAAAGACC
CTAACCTTCTGGAATTATTAGCCCCTTATAAACCCTTTTCCGAATTGCCT
GATTGGGCGGTGCGTGTGGATGCTACTGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_i20.g1 MSMg01no105_i20.g1 CHROMAT_FILE:
MSMg01no105_i20.g1 PHD_FILE: MSMg01no105_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:13 2005
         (416 letters)



>mm_chr2_114931888_114932703
          Length = 816

 Score =  696 bits (360), Expect = 0.0
 Identities = 402/416 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgaagcaagcattacaggattaaaataaaattattatgacccataaaacttcattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caatgaagcaagcattacaggattaaaataaaattattatgacccataaaacttcattca 407

                                                                       
Query: 61  aagcagctaattgacagggtctcctggtccaggaccttggatttatgaaaggatccatca 120
           ||||| |||||| ||| ||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct: 406 aagcatctaattcacaaggtctgctggtgcaggaccctggatttatgaaaggatccatca 347

                                                                       
Query: 121 gtgtgcactggtcatctcacctgctgctctggaccccacactgttagagtcttcatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 346 gtgtgcactggtcatctcacctgctgctctggaccccacactgttagagtcttcatttac 287

                                                                       
Query: 181 ctcctagatgaatcttgggcatctgtctttatcatgtaatcttccactgaaaagctataa 240
           |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 286 ctcctagatgaaccttggacatctgtcttcatcatgtaatcttccactgaaaagctataa 227

                                                                       
Query: 241 aaataaatatgtgctggttggaaagggtgatggtgttgaatggtatgccaaccatattct 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 226 aaataaatatgtgctggttggaaagggtgatggtgttgaatgatatgccaaccatattct 167

                                                                       
Query: 301 gggcatctgaatatgtggtccctatttgatgacattgcttgagtatgcttaacaggtgtg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 166 gggcatctgaatatgtggtccctatttgatgacattgcttgagtatgcttaagaggtgtg 107

                                                                   
Query: 361 gctttgtgggaggaaatatgccactggggcaggctttgaggtttcaaattctatgc 416
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 106 gctttgtgggaggaaatacgccactggggcaggcttggaggtttcaaattctatgc 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)