Query= MSMg01no105_j08.b1 MSMg01no105_j08.b1 CHROMAT_FILE:
MSMg01no105_j08.b1 PHD_FILE: MSMg01no105_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:16 2005
(470 letters)
>mm_chr2_87625529_87626398
Length = 870
Score = 801 bits (414), Expect = 0.0
Identities = 456/470 (97%)
Strand = Plus / Minus
Query: 1 tttcctatgtccactctttcttccagtctataatataaaagaattaatcattcattttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tttcctatgtccactctttcttccagtctataatataaaagaattaatcattcattttaa 611
Query: 61 ctgctggatgtaaacatcatatttatcaggtagaacaccttttatttctcacatgcatta 120
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ctgctgaatggaaacatcatatttatcaggtagaacaccttttatttctcacatgcatta 551
Query: 121 taagttgtggaaataatatgaacactatttcataatgcattcatgctgcacacattatat 180
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 550 taggttgtggaaataatatggacactatttcataatgcatttatgctgcacacattatat 491
Query: 181 gtgacacaataggccaacagtgttcacttagtgcttacatcttataagtccatacatgca 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gtgacacaataggccaacaatgttcacttagtgcttacatcttataagtccatacatgca 431
Query: 241 agcttaaaattaaaatgagtggggctttcttatatacaagattagaataaaatcgttaaa 300
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 430 agcttaaaattaaaatgagtggggctttcttatgtacaagattagaataaaatccttaaa 371
Query: 301 atgctgttccgcaggcactgtgacattttgtaaggctcacaattctgtttaaaaaattat 360
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atgctgttctgcaggcactgtgacattttgtaaggctcacaattctgtttaaaaaattac 311
Query: 361 ttttattcattggatttagtaatattttaaattgaacaagtggtgaaaacatcaatggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttttattcattggatttagtaatattttaaattgaacaagtggtgaaaacatcaatggac 251
Query: 421 aacctatttctaaaaaggcaatattaaaaatgcctttgtttactctgttt 470
|||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct: 250 aacctatttctaaagattcaatattaaaaatgcctttgtttaccctgttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_j08.g1 MSMg01no105_j08.g1 CHROMAT_FILE:
MSMg01no105_j08.g1 PHD_FILE: MSMg01no105_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:16 2005
(158 letters)
>mm_chr2_87473696_87474253
Length = 558
Score = 284 bits (147), Expect = 1e-81
Identities = 156/159 (98%), Gaps = 2/159 (1%)
Strand = Plus / Plus
Query: 1 ttcatcatccaaaagtgtcactatatattgcgacctctgattgtaagaatcactagatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatcatccaaaagtgtcactatatattgcgacctctgattgtaagaatcactagatag 260
Query: 61 acatcatcttctcacctattaaaatctc-ttgtgtatagaagatgagaatctagtttcct 119
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 261 acatcatcttctcacctattaaaat-tccttgtgtatagaagatgagaatctagtttcct 319
Query: 120 ggaaaatgttatctgaaaaccacactagaataattgctc 158
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 320 ggaaaatgttatctgaaaaccacactagaagaattgctc 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space: 82500
Effective search space used: 82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
