BAC Information

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BAC

Clone NameMSMg01-105M04
Chromosome2 (Build37)
Map Location 57,207,818 - 57,208,228
singlet/doubletsinglet
Overlap geneGpd2
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910
Downstream geneLOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105M04.T7 (MSMg01no105_m04.b1)MSMg01-105M04.TJ (MSMg01no105_m04.g1)
ACCAG320028AG320029
length706577
length of high quality
(start - end)
415 (48 - 462)---
definitionCHROMAT_FILE: MSMg01no105_m04.b1 PHD_FILE: MSMg01no105_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:30 2005CHROMAT_FILE: MSMg01no105_m04.g1 PHD_FILE: MSMg01no105_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGC
GGAATTCTTTCCTGTATATCTCTCTTCTGTTAAAACGTTTCTGATTTCTG
CCAGTGAGAAGAGGGGATGTCTTGGCAGCCTGGAGTGGTATCCGTCCCCT
TGTTACCGATCCCAAGTCTGCAGACACTCAGTCCATCTCTCGAAATCATG
TTGTGGACATCAGTGACAGCGGACTCATCACAATAGCAGGTATGTGGGGC
CGACTCATTCTTCATTGATTGCTCCATTTCACTCTAATGAACAAGTGTTT
TGTCTTATTCCTTGCCAAGAGGTGACTTTTGTTATTATTGGTAAATGATC
AATTATAAGAAAAATTCAGAATGCCAACTTAATGGCTTACTGATCTACTT
GTAGGTGGGAAGTGGACCACCTACCGCTCCATGGCATAAGATACCGTGAA
TGCAGCTGTCAAGTTTCACAACTTGAATGCGGGACCGAGTAGGACTGTTG
GGTTGTTCCTTTCAGGAGGCTAAGACTGTAGCCCCACACTCTACATCAAG
CTTGTCCAGGATTATGGCCTTGGAAAGCGAGGTTCGGGGACTTTGTCACA
CTACCTTGGCTTGCTGTTGTTGAAATCTCACTCAGTGGCTGGGGTGGGAC
CCTTCTGATTTACAGTGAACTTTTCCTGGGCCTTGCTATCAAAAAAAAAC
ACAAAT
TCTTTTTTTTTTTTTTTCCTTTTTTTTTCTTTTTTTTTTTTTNCCNTTCC
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTTCACTTCTTTTCNTTTT
TTATTCGATTTACCTTTGTATGCCATGGCGTTACCCCCCGCCCTTTTCTT
CCTCTCACCCGTCGTCCGTCCCCTTCCGTCTTTTTCCTTGTCACATCGGC
CTTACGAACGTTCTTTTTGATTATTTTCATTTTCTTTATTTTTCCCCTTA
CAGATACCCCTCTTCCCTTCCCATTTACCTTTCACTTTTTTTCCTTTCCC
TTTACTTCTCACTATTCTACATTATATAACCCACTTTCCCCCCCTATATT
AGCCTGTCTCACTCACCCATTTTTAATTATATTTTATATAAGCGAAAACC
GGTAGTCAATAAGAGAGAACATCCAACACACATATTTCATTTGAAATAGA
CCCTTTTGATTACGACCTTGATCGGTCGNTCCATTTCCGTNTCCACCTTT
ATAGTAATGAACCTTTTCGTACCTAATTTCAGGCGGTCCTGAATGTATGC
GGATTATTACCTCGTCTATTCTACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_m04.b1 MSMg01no105_m04.b1 CHROMAT_FILE:
MSMg01no105_m04.b1 PHD_FILE: MSMg01no105_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:30 2005
         (415 letters)



>mm_chr2_57207614_57208428
          Length = 815

 Score =  750 bits (388), Expect = 0.0
 Identities = 406/412 (98%), Gaps = 2/412 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcctgtatatctc-tcttctgttaaaacgtttctgatttctgccagtgagaa 63
           |||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattctttcctgtatat-tcatcttctgttaaaacgtttctgatttctaccagtgagaa 263

                                                                       
Query: 64  gaggggatgtcttggcagcctggagtggtatccgtccccttgttaccgatcccaagtctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaggggatgtcttggcagcctggagtggtatccgtccccttgttaccgatcccaagtctg 323

                                                                       
Query: 124 cagacactcagtccatctctcgaaatcatgttgtggacatcagtgacagcggactcatca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagacactcagtccatctctcgaaatcatgttgtggacatcagtgacagcggactcatca 383

                                                                       
Query: 184 caatagcaggtatgtggggccgactcattcttcattgattgctccatttcactctaatga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caatagcaggtatgtggggccgactcattcttcattgattgctccatttcactctaatga 443

                                                                       
Query: 244 acaagtgttttgtcttattccttgccaagaggtgacttttgttattattggtaaatgatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaagtgttttgtcttattccttgccaagaggtgacttttgttattattggtaaatgatc 503

                                                                       
Query: 304 aattataagaaaaattcagaatgccaacttaatggcttactgatctacttgtaggtggga 363
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 aattataagaaaaattcagaatgccaacttaatggcttactgatctccttgtaggtggga 563

                                                               
Query: 364 agtggaccacctaccgctccatggcataagataccgtgaatgcagctgtcaa 415
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 564 agtggaccacctaccgctccatggcagaagataccgtggatgcagctgtcaa 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)