BAC Information

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BAC

Clone NameMSMg01-105P19
Chromosome2 (Build37)
Map Location 109,522,522 - 109,523,006
singlet/doubletsinglet
Overlap geneBdnf
Upstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
Downstream geneLOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105P19.T7 (MSMg01no105_p19.b1)MSMg01-105P19.TJ (MSMg01no105_p19.g1)
ACCAG320193AG320194
length734719
length of high quality
(start - end)
237 (129 - 365)484 (64 - 547)
definitionCHROMAT_FILE: MSMg01no105_p19.b1 PHD_FILE: MSMg01no105_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:48 2005CHROMAT_FILE: MSMg01no105_p19.g1 PHD_FILE: MSMg01no105_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGATCTATAATTGCGGCGCTATACGACTCACTATATCCAGAGGACCGC
GGATTCAGTGAGTTTGCCATCAGACACTGAGTGCAGTGCAGTAGAGTCGA
GTTAATTCATGAGTTCTTGCTGCCCACTGCAGGTTAGCAGAGGCAGAGAA
TAAGAAGGAACCAGTTAGAAGACTAGAACAAATTGCCAGGGTTAGTTTGA
AGCCAAGCAGAGTGAGAGGCCGAGAGAAGCCAGATTGAATCACTCAGCTT
GGAGAGAATTTTGAGCCAGAACAGATAGTTAAACCAGCCAGCCAGAGTTC
AGAAAGAGCTAGAAAGGATAAGTTTATTCAGCGGCTAGTCCCCAAGATTA
CAGTTATATCAGACAACTAAAAGTTACAGCTACAGTCAGCACTGCTGCTT
CTTCATTTGGGAGTATTACAACAGAGCTCTTTGTGTATGGTCATCGAGGA
TGGAAGTTAGCTTTGCCAGTGCCCCAAGCTTGGCGTCACTACCACTATCA
TCTTCCATACTTCTGGATCCACCTACTATACTGATAGACCAATAGTCACC
ACCTCCGTCTGTGGAATGTACAGCCTTACTCTTACTATCCACCTTCCTTC
GCCTTCGTTTGTACTAGGCCCGGTCTCTCCTTATCCGTTACCCCATATTC
CCCCCGATAATTCCCCCCCTAGCGCTCCTGCCCCTCTGCGCCCCCCTGCC
ACGCCAGTCAGCCCTCCTTCTTTCCGACCTCCGG
ATGAAGTGCTAGCCTGGCGACCGCCTGGTTCAAAATAGGGGNGAACTATA
GAAGATCCCCGAAATTCCCACTGTCAATTTGAGGGCACTTTTCTTTGTGA
CATACATGTTCTATGTTTTATGTCATTTCTTTTTAAAATTAAAGATATTG
CATCCTGAAAGTGTCTTGTTCTTATAAATAATGCATTATATGTACATGCT
AATAGATAATTAGATGGTCCAGCCAGGAGAAACATGAAAGAGAACTGGTA
ACTCAAAGCCTGCAGAAGGTGTGTGGGCATTTGGACATCCAGGAAATGCT
ATAGATCTGTCCTTATCTAACTCAGCCTGGTGGAGATAATTAAGAAGAAA
TGTGGGTGTCGAGAGACTGCAAGCCATTCCCTGCGATTGGCTGGATTGCT
GCAGTAGTTCAAAAACAATTGGTACAGCCACCCACACTGGACATGATTGC
CCTTTGATGAGGCAGCTATTGACTTTTATAAAGATGCCATATTTAAAATA
ACTTCTGATGCACTAAGGATGACAGACATCACTCTTGAATTCTATTTTAG
GCAAATGGTAAAAATACATTTCAAAGTACAAACTTTTCAAAATAAGAATA
TACCTTATGGAAATTTTCTTCGAGCAAGCCATTTAGCAATTTGTAATTCC
AAATTTAACAGTTCAACCTGAAGCTGGCAGAAAAATGTGTCTTACATGAG
ATCTTTTACACTGAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_p19.g1 MSMg01no105_p19.g1 CHROMAT_FILE:
MSMg01no105_p19.g1 PHD_FILE: MSMg01no105_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:48 2005
         (484 letters)



>mm_chr2_109522322_109523206
          Length = 885

 Score =  899 bits (465), Expect = 0.0
 Identities = 480/485 (98%), Gaps = 1/485 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcccactgtcaa-tttgagggcacttttctttgtgacatacatgttctatgttttatg 59
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcccactgtcaaatttgagggcacttttctttgtgacatacatgttctatgttttatg 260

                                                                       
Query: 60  tcatttctttttaaaattaaagatattgcatcctgaaagtgtcttgttcttataaataat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatttctttttaaaattaaagatattgcatcctgaaagtgtcttgttcttataaataat 320

                                                                       
Query: 120 gcattatatgtacatgctaatagataattagatggtccagccaggagaaacatgaaagag 179
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gcattatatgtacatgctaatagataattagatggtctagccaggagaaacatgaaagag 380

                                                                       
Query: 180 aactggtaactcaaagcctgcagaaggtgtgtgggcatttggacatccaggaaatgctat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactggtaactcaaagcctgcagaaggtgtgtgggcatttggacatccaggaaatgctat 440

                                                                       
Query: 240 agatctgtccttatctaactcagcctggtggagataattaagaagaaatgtgggtgtcga 299
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 agatctgtccttagctaactcagcctcgtggagataattaagaagaaatgtgggtgtcga 500

                                                                       
Query: 300 gagactgcaagccattccctgcgattggctggattgctgcagtagttcaaaaacaattgg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagactgcaagccattccctgcgattggctggattgctgcagtagttcaaaaacaattgg 560

                                                                       
Query: 360 tacagccacccacactggacatgattgccctttgatgaggcagctattgacttttataaa 419
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacagccacccacactggacatgattgccctttgatgaggcagctattgacttttataaa 620

                                                                       
Query: 420 gatgccatatttaaaataacttctgatgcactaaggatgacagacatcactcttgaattc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgccatatttaaaataacttctgatgcactaaggatgacagacatcactcttgaattc 680

                
Query: 480 tattt 484
           |||||
Sbjct: 681 tattt 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 885
Length adjustment: 10
Effective length of query: 474
Effective length of database: 875
Effective search space:   414750
Effective search space used:   414750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)