Query= MSMg01no106_a02.b1 MSMg01no106_a02.b1 CHROMAT_FILE:
MSMg01no106_a02.b1 PHD_FILE: MSMg01no106_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:49 2005
(641 letters)
>mm_chr2_172126470_172127510
Length = 1041
Score = 839 bits (434), Expect = 0.0
Identities = 446/450 (99%)
Strand = Plus / Minus
Query: 192 caagatgttcccaggaatgttttaactatgaggcatacccaggtttgtttttctcttttc 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 caagatgttcccaggaatgttttaactatgaggcatacccaggtttgtttttctcttttc 982
Query: 252 tcagccccagcagcctctaggctcacaaacaaccagcaatttctgagtactttatatgac 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tcagccccagcagcctctaggctcacaaacaaccagcaatttctgagtactttatatgac 922
Query: 312 ttacaggtcttgaaatttcatctttctttcagaacttgtggcactcctcccctcagtttc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ttacaggtcttgaaatttcatctttctttcagaacttgtggcactcctcccctcagtttc 862
Query: 372 ttggatgctgggattacaagtttgtctccatgtttgctttgaagcagaattttaagttgc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttggatgctgggattacaagtttgtctccatgtttgctttgaagcagaattttaagttgc 802
Query: 432 attcaagggtggaagtgttcttacaggaaacacttttaattcagtgtatttggaaaaatt 491
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attcaagggtggaagtattcttacaggaaacacttttaattcagtgtatttggaaaaatt 742
Query: 492 gtattagtgagagagttaggggctactactgagggtgtgtctaacagcagctcacaagaa 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtattagtgagagagttaggggctactactgagggtgtgtctaacagcagctcacaagaa 682
Query: 552 agcagcgtgtcccacgttaagcatcaagaactgttagactttactacatgccagaatgtc 611
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcagcgtgtcccgtgttaaacatcaagaactgttagactttactacatgccagaatgtc 622
Query: 612 cccatttagaatgcaaaatgccagcacact 641
||||||||||||||||||||||||||||||
Sbjct: 621 cccatttagaatgcaaaatgccagcacact 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_a02.g1 MSMg01no106_a02.g1 CHROMAT_FILE:
MSMg01no106_a02.g1 PHD_FILE: MSMg01no106_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:50 2005
(377 letters)
>mm_chr2_172020229_172021005
Length = 777
Score = 422 bits (218), Expect = e-122
Identities = 354/438 (80%), Gaps = 62/438 (14%)
Strand = Plus / Plus
Query: 1 gtttcataggagactataaactccctgatgaccccacatcacctcccgctgccctgtgct 60
||||| ||||||||| | ||||||||||||| |||||||||||||||||| ||| |||||
Sbjct: 141 gtttcgtaggagactgtgaactccctgatgaacccacatcacctcccgctccccagtgct 200
Query: 61 cggactctatcctgatacatgtctattaatcacttattctccaagctgcagcccctttgt 120
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgactctatcctgatgtatgtctattaatcacttattctccaagctgcagcccctttgt 260
Query: 121 tttttagatttttccca-accatggttctaaggtctctatgtttg--ctgttttcagtag 177
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 tttttaga-ttttcccagcccatggttctaaggtctctatgtttgctctgttttcagtag 319
Query: 178 ctccaaactcagct---------------------------------------------- 191
||||||| ||||||
Sbjct: 320 ctccaaattcagcttctctctctctctctctctctctctctctctctctctctctctctc 379
Query: 192 ------------tctctctctgccattagcacattctcctcctcctggaagtcacaaggc 239
||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 tctctctctctctctctctctgccattagcatattctcctcctcctggaagtcacaaggc 439
Query: 240 tcctttggtgggatgatgtttgttttcctacagaagggagtcctgggctgccaggtagga 299
||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||
Sbjct: 440 tcctttggtgggatgatgtgcgttttcctacagaaaggagccctgggctgccagggagga 499
Query: 300 caccccggggacagctctcgtctctcatggcaactagagccaacactgttgagaactctc 359
|||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 500 cacctcagggacagctctcgtctctcagggcaactagagccaacactgttgagagctctc 559
Query: 360 caggcagacgaggctgaa 377
|||||||| |||||||||
Sbjct: 560 caggcagatgaggctgaa 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space: 282624
Effective search space used: 282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
