BAC Information

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BAC

Clone NameMSMg01-106A17
Chromosome2 (Build37)
Map Location 46,520,359 - 46,520,945
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041337, LOC666604, LOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106A17.T7 (MSMg01no106_a17.b1)MSMg01-106A17.TJ (MSMg01no106_a17.g1)
ACCAG320234AG320235
length7521,458
length of high quality
(start - end)		---610 (97 - 706)
definitionCHROMAT_FILE: MSMg01no106_a17.b1 PHD_FILE: MSMg01no106_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:55 2005CHROMAT_FILE: MSMg01no106_a17.g1 PHD_FILE: MSMg01no106_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCACCCNNCCNNCTCAAAATTTGCGNCCGCTCTACAACTCCTATTCCNN
ANANATCCNCGNAATTCTAATGACTCCTACNTTTTCCCATGNATTGCCTG
TANTTGCANTTCCTCTANNACTGNTCACNCNCTTTCTTGCCNCTTANNTT
ATACTANCTATATGCTTTTTTAAATGCNCAACCCCCTTTATCCCTCAATA
CCTTTTTTAACNCCCCTTTTCCCACCACTATCACCCCTTGAAGGAAAAGC
TGAGGAAGAAAAAGGGAAAGAAGGAAAAAAAAAAAAACNCNNNNNNNNNN
NCCNNNGTGGTGGGGGGGGGGGCGGGGGGGGGNNNNNCNTCCACGCGGTG
GGGGGGGGGGGCGGGGGGGGAGGGAGNNNNNCTCNNNCNCNNNNNCNCNN
NNNTCTCTCAGTTTTATGGGGGGCGCTTNCNNNTNNCCCNNCTCCNCTCC
CCCCCCCCCTTTCCCTACATTTCATTTTTAGAAGTAAGAACGAAGAAAGG
GAGAAAAAGACAAAAGAAAAGGGGCCTCNTTTNNCCTCTTTCCTCCTCTC
TTTCCCCCCCTCCTTTTTCCTCCTCCTCCCCCCCCCCCNCTCCCCTTCTT
CCCCCCCCCCCCTTCCTTTCCTTCCTTTTTCTTTCTTCTTTCCTCCTCCN
CCNCCTNCCTCTCCTTCCCCCCCCCTCCTCTTCTCCCCCCCNCCCTCTTC
TCCCTTCCCCCCTTTTCCCTCCTTCTTCCCTTCCTCTCTTTTTTCCATAA
TG

NGATTTTTTTTTTTTAGAGGATGCGGGGCGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCAGTCTCTCTCCTTTAGAGTGTTT
TTAAGGAGGTAAGAGGGAAACATTCAGCCAACCCTATGTGTATTAACACC
ATCTAGTCTCTACATATGCACCTGCAGAGTTCTGCTCCTAAAGGGGCTGC
CTTAGGGGCTTTGTCTGTGTTGCCTGAGTGCTAAAGCAACTTCTGATGCT
CAGAGAGAAGAAACCCAACCCTTGCACAGTACCAGGAATGATGATGAGAG
GGGAGTTCTAGTAACTAGGCAAGAACTAAGAAAAGAGTATTAAAGTGAGA
TAAAGCCCCATCTCAGGAAGGAAAGGTGTCAGGCAGAGTCAGTTTTCTTT
AACCCTTTGTTTTTCTGCTGGAGCTTCCCCAGAAATTCTTGCTGAACTGG
GAAACCAGCTGGTGTTCTACTGCAGTTCTGGCTTCTGCATCTTTATTATA
GAGTGAGGCATCTATGAAATGCCTCCACATATGAACTGCAGGCAATTAAA
ATCAAGAAACATCAATATTTAGAATAATAATAATAATCAAAATAATAGAA
TTTGAGGTTCTTCGATGATAGGAATGTAGTTATTTATTTATTTCTATTTA
CTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT
TATTTANTNCNCNNCCCNCCCTTCCTCTCCCTTCTTCTCTCTTTTTTTTT
TTNCTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTCTCTTTT
TCTTCCTTCTTTCTTTCTATTCTTTTTTTTCTTTCTTTTCTCCTTTCTTT
TTTTTCTTTTTTTTTCTTTTTCTTTCTCTTTTCTCTTTTTTCTTTTTCTT
CTTTTTTTCCTTTTTCCTTCTTTCCTTTTTTCTCTTTTTTTCTCTTTTTT
CCCTTTTCTTTCTTNCTTTTTCCTTCTTCTCTTCCTTTTNTTTTTTTTCT
CTTTTTTCCCTTCTCTTTTTTTTCTTTTCTCCTTTTTTCTTTTTATTTTT
CCTTTTCTTCTTCTTTCTTCTTTCCCTTTCTTTTTTCCTTTTCTTTCTCT
TTTTTTTTTTTCTATTTTCTCTCTCATCTTTCTCTTTCTNTTTTATTTTT
ATATTCTTTTATCTTCTTTTATCTAATTTTTTCTTATTTTTAATAACTCT
TTTTTCTCTTTTTTTCTCCTATTTTCTTTCTTTTCATCTTTTTTATTTAT
CTTTTCTTATATTTCCTTTTCTTATCTTTTTTATTTATCTCTTCCTATAT
TATTTTTTACTTACTATACTATTATTTTCTTATTTTCTTATCTATTTTTA
TCTTTCCTTTATCTCCATCACTTCTTTCTTTTTTTTTTTATATTATACTT
ATTTTTCTATTATTATTCTTATTTTTTTTTCTTTTATATTNTTCATAATT
TATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_a17.g1 MSMg01no106_a17.g1 CHROMAT_FILE:
MSMg01no106_a17.g1 PHD_FILE: MSMg01no106_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:55 2005
         (610 letters)



>mm_chr2_46520146_46521155
          Length = 1010

 Score = 1096 bits (567), Expect = 0.0
 Identities = 582/587 (99%)
 Strand = Plus / Plus

                                                                       
Query: 14  taagagggaaacattcagccaaccctatgtgtattaacaccatctagtctctacatatgc 73
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 214 taagagggaaacattcagccaaacctatgtgtattaacaccatctagtctctgcatatgc 273

                                                                       
Query: 74  acctgcagagttctgctcctaaaggggctgccttaggggctttgtctgtgttgcctgagt 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acctgcagagttctgctcctaaaggggctgccttaggggctttgtctgtgttgcctgagt 333

                                                                       
Query: 134 gctaaagcaacttctgatgctcagagagaagaaacccaacccttgcacagtaccaggaat 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gctaaagcaacttctgatgctcagagagaagaaacccaacccttgcacagtaccaggaat 393

                                                                       
Query: 194 gatgatgagaggggagttctagtaactaggcaagaactaagaaaagagtattaaagtgag 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gatgatgagaggggagttctagtaactaggcaagaactaagaaaagagtattaaagtgag 453

                                                                       
Query: 254 ataaagccccatctcaggaaggaaaggtgtcaggcagagtcagttttctttaaccctttg 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ataaagccccatctcaggaaggaaaggtgtcaggcagagtcagttttctttaaccctttg 513

                                                                       
Query: 314 tttttctgctggagcttccccagaaattcttgctgaactgggaaaccagctggtgttcta 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tttttctgctggagcttccccagaaattcttgctgaactgggaaaccagctggtgttcta 573

                                                                       
Query: 374 ctgcagttctggcttctgcatctttattatagagtgaggcatctatgaaatgcctccaca 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ctgcagttctggcttctgcatctttattatagagtgaggcatctatgaaatgcctccaca 633

                                                                       
Query: 434 tatgaactgcaggcaattaaaatcaagaaacatcaatatttagaataataataataatca 493
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 634 tatgaactgcaggcaattaaaatcaagaaacgtcaatatttagaataataataataatca 693

                                                                       
Query: 494 aaataatagaatttgaggttcttcgatgataggaatgtagttatttatttatttctattt 553
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 694 aaataatagaatttgaggttctttgatgataggaatgtagttatttatttatttctattt 753

                                                          
Query: 554 acttatttatttatttatttatttatttatttatttatttatttatt 600
           | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 atttatttatttatttatttatttatttatttatttatttatttatt 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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