BAC Information

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BAC

Clone NameMSMg01-106E16
Chromosome2 (Build37)
Map Location 154,905,561 - 155,052,695
singlet/doubletdoublet
Overlap geneItch, LOC100043877, LOC668931
Upstream geneLOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy
Downstream geneDynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106E16.T7 (MSMg01no106_e16.b1)MSMg01-106E16.TJ (MSMg01no106_e16.g1)
ACCAG320418AG320419
length1,2971,350
length of high quality
(start - end)		721 (87 - 807)531 (91 - 621)
definitionCHROMAT_FILE: MSMg01no106_e16.b1 PHD_FILE: MSMg01no106_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:30 2005CHROMAT_FILE: MSMg01no106_e16.g1 PHD_FILE: MSMg01no106_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:31 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(155,051,976 - 155,052,695)(154,905,561 - 154,906,091)
sequence
TACTTTCTTTTACCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCG
CGGAATTCTGCACATGAAGATGGTACCCCTTAAAAGGAGTTCACAACTGT
CAGCTCTATCACTCCATTGCCATGAGAGCCCCGAGCTCTTCCATCTGGAC
CCTTGTGGAACCCACCAAAAGAGCAGACGAAAAGGCAAATGCTCATTTTA
CTCTGTTTTTATTTCAATGTAACATGCAGTAAGAAAAAAAAAAACTTAAC
AGGTTGATTAGCATTTACGATGCTTACAGAGAAAAAGGTCTTAAAAGCAA
CTTAGTCCATCCAGATTTAAGGAAAATCGCTAATTAAACATTCACAATAA
ATCTATTCCCAAATACTCATTTTGGACCAAAATTTGAGAGCATCTGGTCA
ATGTGCCTGCTGTTTAGGTGCATTGTCTTATATACGCTCTGACTCCTGGG
ATATCCAGCCCCCGTTTTTCTAACACAGCAGGGAAGACATATACATGTGA
TCAATTAAATTAAAGGAAGAAATGGAGTTGGGAGACTCCAGGGCTGCAAA
AATATATACAAGCATTTACCTTTTCCAGAACTAAACGTTTCTTCCATAAA
AATATTAAATAGCCAAGCCCTATAGAACTAGGGCCAGGACTACTTCAAAT
ATAACTTCTGTATTTTAAAAATATAGGGCAGAAAGCCTTTTGGATGATAT
TTATACATTTTCACATAATATTTCTAGGTCCCTAAATGAATCATGAAGCA
TTATGCAGAATCAACAAAGTCTATTTTCTTACATTATCTCTTAATTTAAT
CTCATAAATCTCTAGTGAATATGGTAGATAACTATGTTTTAGTACAAGAA
TTGGATTCAATAGGAAGTCTTTGTAGAAGGCTTAATATTTATAGCCATTT
ATTACCAAAGTTCAGGCCCAAGTAATGAATGGATAGTTGGCAAACATTCG
CTCTGTAAAACAAAGCAATTACCATATACATTTTTTTTTACCCTACCAAC
AAAAGGCAAAAATTTCCTACTTGGAAAAAACTAGGCTTTCAAAGAAAACA
GGAATTCCTGGGGTATAAGGTAAAAAAGAGGCTTGGGGAAGAAACCAAAT
TTCCCTTCCGGAAACATTCTTCTGAAGAGAACCCTTTTTTCCCATTTTTG
TTTGAAAGGGACGGGTTATAGGAACAAATTGCCCAAATTATAAGTCTCCC
CGATTAAACAAATTGTTCCTCTTTGGCATCCAAATACATTTTCTCTTCTT
GAAAAAAAGTGTTGCACACCTGGTGTTTGTGTCTTATTATAAACCCA

TTCCTTTTCTTTTTTNAAGATGTGAGGCGTGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTAAAGTCTGCTTAGTCATT
CTTCCAAATGATGAGAGGCCATTGAAATCTTCAGTTTAAGAGAAAAAAGA
AAAAGAAAAAGAAAGAAAAAAATTAAAAAAAAAAAAAGAAATCTTCAGTT
TGTCCTTTCCAACCCATCAGCCTTTGCTTCATGTATTTTAACAAGTCTAT
TCTCATGCACGTACCTGTTTAGGACGGCTGTGATCTCTTCGCGATTGGCT
CTTTTATCTTTTCACAATGGAAAGGGAACAAGGAGAAAACTCTGAGGGGG
TGGGGCATCTCATTGGTGCCAGATGGGAGTGGAAAGCCCTTTGCTATGTT
GCCTGTGTTTGAAGAAAGGTAATATTTGCTTTTCTTTTTTTAAAGTTTAC
TTAGATACATATGTTTTTAAGTATGGCTGAACACATTTTTAAGTAAGGCT
TTGAGGAAACAAACTCCCAGGACATAGTATTTGGAAACCTGGTTTAAACT
ACACTCTGGTAACTACTGACAAGATAGCAAACTCACCCTTTGACCCCACA
CTTGTAGGACACCAAAGACGTACACACGTGTGAGTGGTGACGTTAAAAGC
CAAAGGCTAAAAAAAAGATCTGCATGCCCTTCAGTAGAAGGCTTGTTACA
TAATTATATGATCCCCAGCGAGGAATAGTAAAATGGCTCTGGTTTTTAAG
TTTATTTGTGTGTGCATGTAACACATCAGTGAATCTCTCTTTCCAAAGTG
TGGGTTTTTAGGGACCTTATGGATTGAACTTAGAATATTAAAGCTTGGTA
GCAAGTAACGTTTACCATTTGAGTCTTTTTTTTCCCTTTTTTTTTTTTTT
TCACAATATTTAGCTACTTTTTGGGGGGTGATACTTGAGGAAAATAAAAT
AACAAATGTGGTTATAATTAATAAGTTCCTAAGATGTTTGTTTGTTTTAA
AAAAAAAGGGTAATATGAAGGTTCTGGGTGTCTAATACCTGGTAATCTTC
AGCCATTTGGTATGGTTGTAAGGAAGTAGGAATTGGGGATATTTAAGGGT
TTCCCCTTTTACCAATTTAAACAAATTTTGATGGTCCAGCTTGGTGGATA
ACAGTATAATTCTCCTTTGTTTGTTTAAAAAAGTGTGTGTAAAATATAAA
AATAGGTCAAAAACTAAAAGAGGGATTTTCTTCTAAATCTATATACTTAG
TNTACAATGGGTGGGGCTCTATAGAAGTAATAATCTTATGTGTCTTTTGA
CTATAAGTTGTTTNACAGCTTCTTTATAATAATAATTGAGGTGTGTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_e16.b1 MSMg01no106_e16.b1 CHROMAT_FILE:
MSMg01no106_e16.b1 PHD_FILE: MSMg01no106_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:30 2005
         (721 letters)



>mm_chr2_155051776_155052895
          Length = 1120

 Score = 1371 bits (709), Expect = 0.0
 Identities = 718/723 (99%), Gaps = 5/723 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagttcacaactgtcagctctatcactccattg--ccatgagagccccgagctcttccat 58
           |||||||||||||||||||||||||||||||||  |   |||||||||||||||||||||
Sbjct: 920 gagttcacaactgtcagctctatcactccattggac---gagagccccgagctcttccat 864

                                                                       
Query: 59  ctggacccttgtggaacccaccaaaagagcagacgaaaaggcaaatgctcattttactct 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ctggacccttgtggaacccaccaaaagagcagacgaaaaggcaaatgctcattttactct 804

                                                                       
Query: 119 gtttttatttcaatgtaacatgcagtaagaaaaaaaaaaacttaacaggttgattagcat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtttttatttcaatgtaacatgcagtaagaaaaaaaaaaacttaacaggttgattagcat 744

                                                                       
Query: 179 ttacgatgcttacagagaaaaaggtcttaaaagcaacttagtccatccagatttaaggaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttacgatgcttacagagaaaaaggtcttaaaagcaacttagtccatccagatttaaggaa 684

                                                                       
Query: 239 aatcgctaattaaacattcacaataaatctattcccaaatactcattttggaccaaaatt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aatcgctaattaaacattcacaataaatctattcccaaatactcattttggaccaaaatt 624

                                                                       
Query: 299 tgagagcatctggtcaatgtgcctgctgtttaggtgcattgtcttatatacgctctgact 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgagagcatctggtcaatgtgcctgctgtttaggtgcattgtcttatatacgctctgact 564

                                                                       
Query: 359 cctgggatatccagcccccgtttttctaacacagcagggaagacatatacatgtgatcaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cctgggatatccagcccccgtttttctaacacagcagggaagacatatacatgtgatcaa 504

                                                                       
Query: 419 ttaaattaaaggaagaaatggagttgggagactccagggctgcaaaaatatatacaagca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttaaattaaaggaagaaatggagttgggagactccagggctgcaaaaatatatacaagca 444

                                                                       
Query: 479 tttaccttttccagaactaaacgtttcttccataaaaatattaaatagccaagccctata 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttaccttttccagaactaaacgtttcttccataaaaatattaaatagccaagccctata 384

                                                                       
Query: 539 gaactagggccaggactacttcaaatataacttctgtattttaaaaatatagggcagaaa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaactagggccaggactacttcaaatataacttctgtattttaaaaatatagggcagaaa 324

                                                                       
Query: 599 gccttttggatgatatttatacattttcacataatatttctaggtccctaaatgaatcat 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gccttttggatgatatttatacattttcacataatatttctaggtccctaaatgaatcat 264

                                                                       
Query: 659 gaagcattatgcagaatcaacaaagtctattttcttacattatctcttaatttaatctca 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaagcattatgcagaatcaacaaagtctattttcttacattatctcttaatttaatctca 204

              
Query: 719 taa 721
           |||
Sbjct: 203 taa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1120
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1110
Effective search space:   789210
Effective search space used:   789210
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no106_e16.g1 MSMg01no106_e16.g1 CHROMAT_FILE:
MSMg01no106_e16.g1 PHD_FILE: MSMg01no106_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:31 2005
         (531 letters)



>mm_chr2_154905361_154906291
          Length = 931

 Score = 1011 bits (523), Expect = 0.0
 Identities = 529/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagtcattcttccaaatgatgagaggccattgaaatcttcagtttaagagaaaaaaga 60
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 201 cttagtcattcttccaaatgatgagaggctagtgaaatcttcagtttaagagaaaaaaga 260

                                                                       
Query: 61  aaaagaaaaagaaagaaaaaaattaaaaaaaaaaaaagaaatcttcagtttgtcctttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagaaaaagaaagaaaaaaattaaaaaaaaaaaaagaaatcttcagtttgtcctttcc 320

                                                                       
Query: 121 aacccatcagcctttgcttcatgtattttaacaagtctattctcatgcacgtacctgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacccatcagcctttgcttcatgtattttaacaagtctattctcatgcacgtacctgttt 380

                                                                       
Query: 181 aggacggctgtgatctcttcgcgattggctcttttatcttttcacaatggaaagggaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggacggctgtgatctcttcgcgattggctcttttatcttttcacaatggaaagggaaca 440

                                                                       
Query: 241 aggagaaaactctgagggggtggggcatctcattggtgccagatgggagtggaaagccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggagaaaactctgagggggtggggcatctcattggtgccagatgggagtggaaagccct 500

                                                                       
Query: 301 ttgctatgttgcctgtgtttgaagaaaggtaatatttgcttttctttttttaaagtttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgctatgttgcctgtgtttgaagaaaggtaatatttgcttttctttttttaaagtttac 560

                                                                       
Query: 361 ttagatacatatgtttttaagtatggctgaacacatttttaagtaaggctttgaggaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagatacatatgtttttaagtatggctgaacacatttttaagtaaggctttgaggaaac 620

                                                                       
Query: 421 aaactcccaggacatagtatttggaaacctggtttaaactacactctggtaactactgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaactcccaggacatagtatttggaaacctggtttaaactacactctggtaactactgac 680

                                                              
Query: 481 aagatagcaaactcaccctttgaccccacacttgtaggacaccaaagacgt 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagatagcaaactcaccctttgaccccacacttgtaggacaccaaagacgt 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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