BAC Information

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BAC

Clone NameMSMg01-106I03
Chromosome2 (Build37)
Map Location 111,202,836 - 111,203,462
singlet/doubletsinglet
Overlap genenone
Upstream gene1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282
Downstream geneOlfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106I03.T7 (MSMg01no106_i03.b1)MSMg01-106I03.TJ (MSMg01no106_i03.g1)
ACCAG320576AG320577
length8661,511
length of high quality
(start - end)		37 (65 - 101)625 (87 - 711)
definitionCHROMAT_FILE: MSMg01no106_i03.b1 PHD_FILE: MSMg01no106_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:03 2005CHROMAT_FILE: MSMg01no106_i03.g1 PHD_FILE: MSMg01no106_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:03 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATTCCCANCCGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCC
AAGAGGATCCGCGTAATTCTCTGTTTCCCCCTATTCCCCATTTTTAAACA
GGGCCTGCTGTCTTTTTTGCTGTTTAGCTTCTTGAGGTCTTTATACCTTT
TGAACAATAGCCCGCTATTGGATGTAGTGCTACCGAAGAATTGCTCTCAA
TCTGTGAAACGTCCACTCGCCTCATTATCTACTGTCCTCTGTCCGTACCG
AATACATCCTTATTTCTTGATGCCTCATTCGATTTATATACTGCGTATCT
CACCATTTACAGATGTGAATTTCTGATTAGCTCCTGCTTTCTTTTCTTTT
CTTCCTCTTTCTGTTCTTTCATTCCTTTAGCCCCTTCCCTTCTTTCTTCC
TTCTCGTGCCACATCTCCGTATCCCTCGCTTCACCCCATTATATTTCATT
TTTTCGTCCCTCCATCCTGCTCACATTTTCTCCCTTTTTTCTCTGCCGCC
CCCGCCGTGTTCCCCTCCCCTATACTTTATCTACTTCCGGCTACCCTTTA
TCCTACCTGCTCCCTTCCACCTCTATCTTTTTTTCTCATCCCCCTTAACA
CCTCTTATCCGGCCTTCTTTTCTTCCCCTCCTACGCTTTTTTACTAGACA
TGACTCGGTCCTCTTCTCTATCTCTTCCTATCACCCTACCTCCCGTCCCC
TGTCTTTCTCATTATTCCTTCCTATTCTCTCCTCTCCATCACCTCACTAC
CCTATACTAGGCCTTTCCCTTTCCGCTTTTCCCTCGCCCTTTTTTTATTC
ACACTTTATTTCTCATCTCAATTTACTGTCTTCTGGTCCTCTCTCCACCC
TTTCTTCGGACTTTTN

CTTTTTTCAGAGGAGCTGCGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATACCCCCCTTTTAAATTGGATTATTTGGTT
TGTGGATGTCTGTACTCATTCGCTCTTTCTCTAATCTGCCAACTTCCCAA
TAATGACACAGAGACCTTTTTTTTTTTTTAATTATAAAAGTTTGGACTTA
GCTTGGCTCAGACCCTCAGCTAGCTCATCTAAATAAACCTGACCATCAAG
CTCTGTCCCACCATGTGGCTTGTTAGTTACCTCCCCTTCAGTACTAGTAC
CAGTTCCTTTCTCCTATGGGCTGGTGAAATCACATGTCTGACTAGCAAGT
CTCCCACAACAGACTCTTTCTCAAAGTTCTTACCTTTCCTGAAAGTCACA
TTTCACATTAATGCTATTGTTGACAGATTGAATATTTTGCCTGGTTTACC
TAGTGCATGTTTTATTTTTGGCTTGCCCATGGTACTGAGGAGGGTAGATA
CACGTACTGAGTTCATTAACATTTAAATAATGACAATAATATAGACATGG
AATTATTAATGCATTATTTACTTTAAAAAGTGTACACATATGGAAGTAAA
ATATGACAACCAATGCTAATGCCAACACATAACTTCTACTAAAATATTTT
TCTGCAAAAGAAGACACCATTCTTAAACACTTAAACATCACAAAATTTCC
CCTGCTGAACATTTAGATCCATGTTATATATGTAGACACTGAATTTTAGA
GATACGGAGTGTGAGATTCTTATAGCTAAAGAATATGGTAATTCATATTC
CTAATTATCAAGTTATGTTCTCAAATGGGAACCCATTAAATATATGCTAT
GAAATTTCTGAAGAGATCCATCCATTAGATTTTAAAAATTTCACTTTCTT
TAATTGCTAAAAAATTGCTTCTTTCTCCTGGTTCCTTTTTGTAATAATAA
ACCTTTTCAACCTAAAAAGTTCTGGGGTACCCCTGGAAGGCACAACCCCT
TGAATTCCTGAATTTAAGGCCCCCCTGGGCGGAAAATGGGGGGGTAAAAA
ATCCCTGGGTAACAAAAAAACTTCCTCCTTTTTTTATACATATCCTCAAA
AAAAAAAACCTTGTTCTCTTGAAAAATTTTCTTATCATAGAGTAATTATA
CTCCGGGGCGCCTTTTTGGTAACTTTTTCGTGGGTGGCACAATGTACAAT
CCCCATAATTGGGGGGCCCCTCCCCCTCCCTCCTCCTGTTTGGTGCCCTC
TCTACAAAAATCAACAATTCTTCTAATTACAATTGCTTCCCAACCCAACT
CTTCTCTCTCCACTTATCTATACACTTCACCTATAATAACTTACTACTCT
CTCCTACTTCTCTTATACTCTCATTTTTCAGGATGAACCTCTCTTTATAT
AATTCATTCCTTTCTTTCTTATTCTNATATTATCACCATTATATTCATCT
ATAATACATTTCTCAAAACATATCTCTTTTACATATGACTACATATTCTT
TATCTATTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_i03.g1 MSMg01no106_i03.g1 CHROMAT_FILE:
MSMg01no106_i03.g1 PHD_FILE: MSMg01no106_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:03 2005
         (625 letters)



>mm_chr2_111202638_111203662
          Length = 1025

 Score = 1131 bits (585), Expect = 0.0
 Identities = 616/627 (98%), Gaps = 2/627 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggattatttggtttgtggatgtctgtactcattcgctctttctctaatctgccaacttc 60
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 199 tggattatttggtttgtggatgtctgtactcatttgctctttctctaacctgccaacttc 258

                                                                       
Query: 61  ccaataatgacacagagaccttttttttttttt--aattataaaagtttggacttagctt 118
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 259 ccaataatgacacagagacctttttttttttttttaattataaaagtttggacttagctt 318

                                                                       
Query: 119 ggctcagaccctcagctagctcatctaaataaacctgaccatcaagctctgtcccaccat 178
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 319 ggctcagaccctcagctagctcatctaagtaaacctgaccatcaagctctgtcccaccat 378

                                                                       
Query: 179 gtggcttgttagttacctccccttcagtactagtaccagttcctttctcctatgggctgg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtggcttgttagttacctccccttcagtactagtaccagttcctttctcctatgggctgg 438

                                                                       
Query: 239 tgaaatcacatgtctgactagcaagtctcccacaacagactctttctcaaagttcttacc 298
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgaaatcacgtgtctgactcgcaagtctcccacaacagactctttctcaaagttcttacc 498

                                                                       
Query: 299 tttcctgaaagtcacatttcacattaatgctattgttgacagattgaatattttgcctgg 358
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 499 tttcctgaaagtcacatttcacattaatgctattgttgagagattgaatattttgcctgg 558

                                                                       
Query: 359 tttacctagtgcatgttttatttttggcttgcccatggtactgaggagggtagatacacg 418
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 559 tttacctagtgcatattttatttttggcttgcccatggtactgaggagggtagatacaca 618

                                                                       
Query: 419 tactgagttcattaacatttaaataatgacaataatatagacatggaattattaatgcat 478
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 619 tactgagttcattaacatttaaataatgacaataatatagacatggacttattaatgcat 678

                                                                       
Query: 479 tatttactttaaaaagtgtacacatatggaagtaaaatatgacaaccaatgctaatgcca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tatttactttaaaaagtgtacacatatggaagtaaaatatgacaaccaatgctaatgcca 738

                                                                       
Query: 539 acacataacttctactaaaatatttttctgcaaaagaagacaccattcttaaacacttaa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acacataacttctactaaaatatttttctgcaaaagaagacaccattcttaaacacttaa 798

                                      
Query: 599 acatcacaaaatttcccctgctgaaca 625
           |||||||||||||||||||||||||||
Sbjct: 799 acatcacaaaatttcccctgctgaaca 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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