BAC Information

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BAC

Clone NameMSMg01-106L05
Chromosome2 (Build37)
Map Location 61,286,777 - 61,287,377
singlet/doubletsinglet
Overlap genenone
Upstream genePla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10, Dpp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106L05.T7 (MSMg01no106_l05.b1)MSMg01-106L05.TJ (MSMg01no106_l05.g1)
ACCAG320711AG320712
length1,2961,323
length of high quality
(start - end)
601 (127 - 727)561 (131 - 691)
definitionCHROMAT_FILE: MSMg01no106_l05.b1 PHD_FILE: MSMg01no106_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:31 2005CHROMAT_FILE: MSMg01no106_l05.g1 PHD_FILE: MSMg01no106_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTTCTTTTTNNTTACACTGGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCCACAGCACCCTCCCTCCCCCTTTAAAGCTCTCTTGAGACA
CAGAATCCTATTCCTGGCCCATGGAGTGTACTCTGGCATGGAAGGATATT
TCCCAATGCAGTAGTCACTTGCACACATCCGTGAAAAGTGTGTGAACAAA
GGAACTGCTGTCCGGCTTCTTCCACTGCCTACTACAATGCCTTGCCCTGA
GCAGTCCCACTACTAAAACATATTATTTAAAGAACTCTGTGGGTTAAGAA
GAGCAATCAATAGCTAAAAATTTCAGTTGGAAGCCTATTGATTTTCCCCC
ATTTTAGAAAGATCACAAGCCTGGAAGAACAATAGACAGTTTCTTCTGGT
GACTATTCTGATTTCTGACTGTGACGCTTTCCCAAGGGCACTTGTCTGAA
GTTCACCTCTCGTCACTCCAACCGACATGTCCCCCGTAAAGAGCAAAGCA
ACTTCAGCTCCCTTCAGATGGATTTCATAATTCATCTCCAATAGTTCATG
CGGATGTCTAGTGAGACTAGCATGGCTATGTGTTGCTATCTGTGTCAGAT
TTCATGTGTGTTCTTCTGTTTAAAGATGCCAAGAAGCCCCTTAAAATTTT
TAGGGAACAGAACCATGTCTTCAAAAAGATCTTTTCATTCTCACCAGGAA
AAATAATTCACTTGATTTCTGTTCCTTTTCCAAAATGGCTTGTTTCCTCC
TTGCTGGCAACGTGTCACCTCTTCTGAGCAGATTCACTCACAGGCACAAG
GATAGTGTTGCCGTTCCCTTAAAGAATGGCGATCTTGAAGTAGTCTCAAA
CAATGAATCCCAGAACATGATTTTCAGATGTTGCCCACTTTAATAAAACC
CTAGTAATTTTTTTTGTTGCCAGGTTACCTCCATGGCTCATTTTTAAGCT
TTTCCTTAAGTTACCATTTTATTTGCCCCAAAACCCTGGCCTTAAGGTAA
TTTTCCCCAATTTCAATTTGCCCAAAATTTCTTGATAAACAATTCCTAAA
ACTCTCAAAAATCTTTTAAACCCCTTTTTGAAAAAATATTCCTCTTATTT
ATATAAAAAATCTTTTTAAAAGTCCCCTGGGGCTTACTTGTTTTCCTGGT
AAATAAAAATAAAAATTTCTTTTTTGGACTTTCAAAATAAATATAAACAT
TTTGTGTAGAAAATTTTAAATCTTTGTTTCCACTATTATATCCTCTGTAT
AAAATTCTTCTTATTTAACATTGTGTTCTTCTCTCTTTNATAATAA
CCAAAATTTTTTTNTAAGATTGTGATGCGTGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAATGAGGAATACCG
AATGGCAGAGAAGCACTTGAACCCCTGTAAAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGTTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAATCTAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACACTCACAAAGAAACTCACACAATATGTATTCA
CTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATC
TAATTTGCTAAACCCATGAAACTCATGAAGAATGAAGACTGCAGTGTGGA
CACTATGCCCCTCCTTAAATCTGGGAACAAAATACCCATGGAAGGATTTA
CAGCAACCGAGTTTTGGAGTTGAGATGAAAGGATTGGACCATTGTAAATC
CTGCCTTATTCAGGTGATCCACCCCTTAATTCTGCATTCAAACGGTTTGA
CACCATTGCATAATACTAGTAATAATTTTTATTGAAAGGACCCCAAAGTT
ATTCTGTCTTTTGGTGAAAATAAGGCCGGGTTCCCAGACAAACACATTAA
TTGAATGCTCCCACTCTCACCTAAGGGAATGGATTCAAATGGCCTTCTCA
AGGGAAGGAATCTTAAATAAAGTTCCCCAGGTAATCTATAAGGCAATCTG
GCAACCCTATTATGTCGAAACAATTTATTTGGAAGTCTAACCTGGTAACC
CCGCAAACTTCTGTGACTTTATAGTGGCTTATATTTCTAAAGTAATGGTC
TTTATTTTCTCCCTTTCATCGGTTAATAAAGAAGGCCTTTGTGTAACTTT
CTCAATTCTTTATTGGCCTCCTTATATAGAGGGTAATACTATCTCTGTTG
AATATAAATCGTATATATCGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_l05.b1 MSMg01no106_l05.b1 CHROMAT_FILE:
MSMg01no106_l05.b1 PHD_FILE: MSMg01no106_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:31 2005
         (601 letters)



>mm_chr2_61286577_61287577
          Length = 1001

 Score = 1116 bits (577), Expect = 0.0
 Identities = 595/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtactctggcatggaaggatatttcccaatgcagtagtcacttgcacacatccgtgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtactctggcatggaaggatatttcccaatgcagtagtcacttgcacacatccgtgaaa 260

                                                                       
Query: 61  agtgtgtgaacaaaggaactgctgtccggcttcttccactgcctactacaatgccttgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtgtgaacaaaggaactgctgtccggcttcttccactgcctactacaatgccttgcc 320

                                                                       
Query: 121 ctgagcagtcccactactaaaacatattatttaaagaactctgtgggttaagaagagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagcagtcccactactaaaacatattatttaaagaactctgtgggttaagaagagcaa 380

                                                                       
Query: 181 tcaatagctaaaaatttcagttggaagcctattgattttcccccattttagaaagatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatagctaaaaatttcagttggaagcctattgattttcccccattttagaaagatcac 440

                                                                       
Query: 241 aagcctggaagaacaatagacagtttcttctggtgactattctgatttctgactgtgacg 300
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 441 aagcctggaagaacaatagacagtttcttctggtgactattctgagcactgactgtgacg 500

                                                                       
Query: 301 ctttcccaagggcacttgtctgaagttcacctctcgtcactccaaccgacatgtcccccg 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ctttcccaagggcacttgtctgaagttcacctctcgtcactcctaccgacatgtcccccg 560

                                                                       
Query: 361 taaagagcaaagcaacttcagctcccttcagatggatttcataattcatctccaatagtt 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 taaagagcaaagcaacttcagctcccgtcagatggatttcataattcatctccaatagtt 620

                                                                       
Query: 421 catgcggatgtctagtgagactagcatggctatgtgttgctatctgtgtcagatttcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgcggatgtctagtgagactagcatggctatgtgttgctatctgtgtcagatttcatg 680

                                                                       
Query: 481 tgtgttcttctgtttaaagatgccaagaagccccttaaaatttttagggaacagaaccat 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 tgtgttcttctgtttaaagatgccaagaagccccttaagatttttagggaacagaaccat 740

                                                                       
Query: 541 gtcttcaaaaagatcttttcattctcaccaggaaaaataattcacttgatttctgttcct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtcttcaaaaagatcttttcattctcaccaggaaaaataattcacttgatttctgttcct 800

            
Query: 601 t 601
           |
Sbjct: 801 t 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)