BAC Information

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BAC

Clone NameMSMg01-107C12
Chromosome2 (Build37)
Map Location 147,308,382 - 147,308,512
singlet/doubletsinglet
Overlap genenone
Upstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
Downstream geneLOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107C12.T7 (MSMg01no107_c12.b1)MSMg01-107C12.TJ (MSMg01no107_c12.g1)
ACCAG321048AG321049
length1,3201,356
length of high quality
(start - end)
91 (186 - 276)131 (145 - 275)
definitionCHROMAT_FILE: MSMg01no107_c12.b1 PHD_FILE: MSMg01no107_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:37 2005CHROMAT_FILE: MSMg01no107_c12.g1 PHD_FILE: MSMg01no107_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAGACATTNNTTTGACATTGTGCCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCTTCTACCCACCATAACCCCTTTTAACAGCTGTCCTAAAGA
GGTTAACTGCTCAGAATCCCTTAAAAGACCCCGCAGAGAGGTATATAAAC
ATTTCAGAAGCATGTATTAGCATACTCAAGTCATTCTTTACTCCTCCCTG
GAGATACACTGCAAATGAAATCCTTTTGTAGCAATGGGAGCAAGGTTGGA
CTGACTTTAAATTCTAGCTCTGTCACTCACAAGTTGTGAGAACTGGAGGA
AATTGCCTCATCGCTCTGAACCTCAGCTGACATCTCTGGAGCGACCTTCA
TCATGTGGCTTTATAGTCTTGCTGTGTCACTGAAAGGTTAACCATATATA
GAGAACACTTTTTCATCAAGGTCTCTGCCCCACATCTAGATGGAAAATAA
AACAAGACTTTTTTTTTTCCCCCCCCACTTGTTCTGGAGAACATTATCAC
AAAAAGAGGTGTTTGAACATGCACACACCGATATAAGTAAACAACCTGAT
ATTCTTAGTCTAAAGAGATACCTGACTGAGTAATGCGTTTAATACATTCA
TGCAGTCCTGAATTCTGATTTTCCCAGATTCTTACTAATATCTGACTCTT
GTTGTGCTAGTCTGTGTCCCCATTGTTGTGGCATAGAACCTGATATGTGC
TCCTCCCCGCTTACACAGCTTTACTTTCTGTTAAAAATTACAATCATTCC
CTAAAATTTATTTTTTTTCCGAATTTCATTATAATACACCTCTTAATCCA
TTCTCCTTTCTTTAGTTAACCCTACTGCACCAATCACCCTACCCTCTCTA
TCCATGTCTCTCCTTTGCCTCTTGTACCCTCTTAATTAATAATAAATTAT
CCACGTTATCTTTTTTTTTGTCGTTTTTGCTTCTTTTTTTTTATTCTCTT
CTCCTTCTCCTTTATTACATTTTTCTCCTCGACTTCTACCAATTCTCTTT
CCCTAATCCCTCTATTTTCCTTTCTCTCTTTTTTCGATATATTCCCCCCC
TTTTTTTTATTTTTTTTTTCCCTCCCCCCCCCCCCCCCTTTTCTACACTA
ATTTCCTTCTTTCTTCACTCTTACCTTTTTTTATTTCTTTTGTTCATCTA
AACTCTTTACTTACGTATATTTTGTTCTTTTACTATTATTATTCCATCCC
TCTATCACACCACTTCTCCATTCTAGTTCCTTACCAGTTGCTACTTACCC
TCTATCACTCCGAACATATATCGTATCTTTGTCGCTTCTATCATCCTTAT
CGATTATCTTCTATCATTTA
NCCAGAATTATNTNNCGAACATGTTAGNCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTTTAAGGTCTTCATA
AAAATATCCGGTTGCAGAAATATTCCCTTTAAAATGAACTAAGAGGCAAG
AAATTAAGAATTCATTGGTCTCTGCTAATTCATGTAATTGTATATTTTGG
AGGTAAGCACAACAGCATAGGTTTGCTGTAATGGAACTGATTGGAAAATG
ATCTCCTGAAGCAAATTTATTGCTGGTCATAAGATTACAAAACTGCTGGG
TTTGGTAAAGTCTCCAGTACCAACTGAAAGTCTACTTTAATAAAAAATGT
GGCTCTGAGAATTGAGGCTTTTTTCCCCCCTGAAGAGGACATTTGATCCA
GTAGAATTGCATTGTTTTTTTCTCCATGCTGACCTTTCCTAAAATCTATC
AGGTTGTTGTGTATATTTATTTTTTGCCCCCCATTACTCTAGTAATGCAA
AAAAAAAAAAAGAGGAGGTCCTTAATATTAATCTGACTTGTTCCTACATA
GGATTCTCATGATGAAAAGGTTACAGCTTCGTTTGAATTTTGTTGAATAA
GGCAAGACTGTTATTTTTCTGACTCTAAATGTGTTTGGCATAACTGAGTC
TTTTATGCTAGGAAAAACTACTTCAGAAATTATATTAAGTAATTTGCTTG
TTCACTATATTGCTTTGAATTCTTTTTTTTATAACTTTACTATAGTTCTG
TTTTCAATTAAATTGGTATAGTATTCTTAATGTTAGATTAATTTAATAGT
CCTTTTGAATAAAAAATTCTTAGTATAATATTTTAATATTATTGTTAATA
ATATTTGCTAATTATTTTTTTTATTACTGATCAATTATTTAAAATTATTC
TTGTTTTTAATATTATTATTGATTTTATGAATTAATTATTTTGTGTTAAT
TTATTATCACATTAATAAATATTGTTCTTATATTTAATTGTAATAAAAAA
TATATTTATAAATAAATTTTATTAAAAACATATTTTGTAAATATTTTTTT
TTGAATTATTATATTCACCATTAATTAAATAGTTATTTATATATTAATAT
TCTTATCTCAATTAATTATATGATATAATACATATATTATTTTTTCAATA
ATAACATATAGTAGATATTATTTGTATATTATATTGCATTTACTAATTAT
TATCATATAATTAATTTTACTTAGTTAATCATTGATTTTATACTAACTTT
TGGATATATAAATATTCTATAATTTATTCTATATTAATATGTGTATCTCT
AACTGTCTAATTATTATTTTCAGATCATTTANGTTCTACTATAATATTTA
GTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_c12.g1 MSMg01no107_c12.g1 CHROMAT_FILE:
MSMg01no107_c12.g1 PHD_FILE: MSMg01no107_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:38 2005
         (131 letters)



>mm_chr2_147308182_147308712
          Length = 531

 Score =  253 bits (131), Expect = 2e-72
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaagaaattaagaattcattggtctctgctaattcatgtaattgtatattttggaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaagaaattaagaattcattggtctctgctaattcatgtaattgtatattttggaggt 260

                                                                       
Query: 61  aagcacaacagcataggtttgctgtaatggaactgattggaaaatgatctcctgaagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcacaacagcataggtttgctgtaatggaactgattggaaaatgatctcctgaagcaa 320

                      
Query: 121 atttattgctg 131
           |||||||||||
Sbjct: 321 atttattgctg 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)