Query= MSMg01no107_d19.b1 MSMg01no107_d19.b1 CHROMAT_FILE:
MSMg01no107_d19.b1 PHD_FILE: MSMg01no107_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:50 2005
(280 letters)
>mm_chr2_3661762_3662441
Length = 680
Score = 542 bits (280), Expect = e-158
Identities = 280/280 (100%)
Strand = Plus / Minus
Query: 1 ccttgatctgcagcatcctctcatatccctgaaatccctgagctatgcacctctacactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ccttgatctgcagcatcctctcatatccctgaaatccctgagctatgcacctctacactg 421
Query: 61 tggaattcagaacaaaacccataattactcacctcccttagctaaacacagtcagtcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tggaattcagaacaaaacccataattactcacctcccttagctaaacacagtcagtcacc 361
Query: 121 cttccaaaactccaacacctctctctagctctgacagaattgaaatgtttcaccctgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cttccaaaactccaacacctctctctagctctgacagaattgaaatgtttcaccctgaga 301
Query: 181 tatgaaagggaatgttctggccttgctacaaatgctaaaacctgtaactaacaaaagact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tatgaaagggaatgttctggccttgctacaaatgctaaaacctgtaactaacaaaagact 241
Query: 241 gcttgcttttagtaaacatgtaatttaaatttctaagaag 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gcttgcttttagtaaacatgtaatttaaatttctaagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no107_d19.g1 MSMg01no107_d19.g1 CHROMAT_FILE:
MSMg01no107_d19.g1 PHD_FILE: MSMg01no107_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:50 2005
(333 letters)
>mm_chr2_3525840_3526576
Length = 737
Score = 601 bits (311), Expect = e-176
Identities = 329/337 (97%), Gaps = 4/337 (1%)
Strand = Plus / Plus
Query: 1 ggcattttaaaatttggaaaactttccaaaatttgcttctgaaaatactctaaagtagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcattttaaaatttggaaaactttccaaaatttgcttctgaaaatactctaaagtagtc 260
Query: 61 taggcagatattattatccactcagaaaataaggccatttattgaaactctaatagatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggcagatattattatccactcagaaaataaggccatttattgaaactctaatagatga 320
Query: 121 atgacgtcatcctgactggtaaaaccacactggcatagctttgcctcctgccaatcagta 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 atgacgtcatcctgactggtaaaaccacactggcatagctttgccttctgccaatcagta 380
Query: 181 tcttcccactgcccagagc----tccctggcaggctgattaattgtcagtctctgggtga 236
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttcccactgcccagagccagctccctggcaggctgattaattgtcagtctctgggtga 440
Query: 237 gaatgctttatagagtggagagagagatttgcttcatttcctcattcttgctcttcagag 296
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 441 gaatgctttatagagtggagagagagatttgcttcatttcctcagccgtgctcttcagag 500
Query: 297 tgcaatcaatacctgctgaacaaaggcatctgtgcag 333
|||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcaatcaatacctgctgaacaaaggcatctgtgcag 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 737
Length adjustment: 9
Effective length of query: 324
Effective length of database: 728
Effective search space: 235872
Effective search space used: 235872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
