BAC Information

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BAC

Clone NameMSMg01-107E14
Chromosome2 (Build37)
Map Location 141,393,213 - 141,504,179
singlet/doubletdoublet
Overlap genenone
Upstream geneFlrt3
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107E14.T7 (MSMg01no107_e14.b1)MSMg01-107E14.TJ (MSMg01no107_e14.g1)
ACCAG321138AG321139
length1,3041,451
length of high quality
(start - end)
325 (131 - 455)205 (142 - 346)
definitionCHROMAT_FILE: MSMg01no107_e14.b1 PHD_FILE: MSMg01no107_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:57 2005CHROMAT_FILE: MSMg01no107_e14.g1 PHD_FILE: MSMg01no107_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,393,213 - 141,393,537)(141,503,979 - 141,504,179)
sequence
ATAATTTTTNNTAACACTGCGCCTATAGACTCCTATAGGGAGAGGATCCG
CGGAATTCTGCTAAGAAACAACACCCTTTTAGGAGGCTAGACAGNAAAAC
TCAATCGACAATTGAGATTTCAAGAACACAGATCCTCCCAATTTGTAATG
TAGTTATTTTGTTCTGATAATTTTATGATTAGACATTCTCATGTCTCAAT
CTTCCTCATATGAAGACATAAGTGATATTATGCAGAATATTTCAAACAAT
TAATAATATTGTTCTAAAACAACAGAGGAGAAAACATTTATTTAATTTTA
CTTAGAACATTTCTGACAAATTAGTAATGAAAACTGTGGCAGATTACGTT
ATGAGATTTGTAGCAACTCCCCTTGATATCATGGGTATTGCTTAATATCT
CTATTATTATTTTTAATAATTTTAGGTCTCATTCTCAAGTAATGGTAAGA
ATTGGCAAATATGTAGATTCTTGTCTTTTCAAGCCTCCAGAACAAATAAT
GGTATTTTGTAAGTCTGAGTTAAAATGTGTTTCAAAATCCCTTTATCGAT
CATGCCTGCTATATGCCTCTCTTAAAGGAATACATTATACATTGGATCAT
ACACGTAATTTAATTTGACTGTATACAACCTAATCTGACTGTATAATTTT
TCATCATTAGCACGTATCATCTCAAAAACATCTCTACCAAATTAGAAATA
AATTAACCCTGTCTTATCTCAAGTTGTGTGTGTATGTGTATGTGTCTACG
TATCTGTTTCTGTGTCTATGTCTCTGTGTGTTTACTTTAATTTATCTGTG
CTCCACACTTATGCAAACTATTGTATGGCCCACTTGTTTTCTTCCTGCTT
TTTTTTACCTCCTTTTTTATATTTTCTATTGTGTCTATGTCATTTATAAT
TATTTATTACATCTTATTTATCTTTTTAAAAAAATTTGACCTATCTTCCT
TTCGCTTCTTTCCATATTTACCCCTTTGTAAAAATTCTTTTCCCTTATTA
TGTAATAACCAATTTTTATTGTTTCTCCCCCCTTTTTTTTTATTTTTTTT
TCCCCCCCCCCCCCCCCCCAAAAAAATAATAATAAATCGTCTTTTATTTT
TTANCTAATATTCATCTTTTCTTTTTCCTTTCTTTTCGTCTCATCAATTT
TACTTCTCACATGTGTTTTCATTGTTCTACTTTCTTAATTCCTTAAAACT
CTTCATTCACTATCCCTTATAATATTCTTCTAAACCACGTTCTTATACTT
GTTTCCTCTCTCTTGTCAAAAGTTATTCGCTTAATCTCGCACCTCTTTTT
TTTG
NNGGGAGTATTTTNTAGTACACGCGAGGCTGGGGCGCCGATXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAACGCTTGACAAAGAA
ATGAAAACAACATGAAANTCCCCTTAAAGGGCTCCAAAAAAAAGATAGGT
TTGATAACCTGAAACAGGAAGAAAAGGAAGAAACAAACAACTACCCCACC
TGGAAAGTTTAGAGAGTTAAGCAAAGGAAGGTAGTTCTAAGTGAAATTTG
GAGTTCACCCCCATCCTCATATGTTTTTTTTTTCTGCTCAAATGCTCTCT
CTAGCCACTCTCATGATAGGCACATGAACACATTACATTGTATAGTACAA
TGGCACTCATTATAGTAGTGTGAATGCCTGCCCTTTATCTTATTGCTTAT
CAGCGCCAAGATTTTTTTTTATTCATCTGTCACCACAGGATTTGAAGAAA
GTGTTCTGTGCCATTTTTTTTTCCCCCCCCCCCATTATTTATTTACTCTC
CTAAAAAAAAAAGGGGGGGGGGTATTCCTTCCACCTCTCTTGTTCTTTCA
TTTCATGACTCTAGTTGTACTCTGTCTCTCTTTTTTCACACATTCTCATT
CTTTTCACGTTTCGTCCTATCTGTAATTGTCCCCATTTACCATTTTCCCT
CTTCTTTACTTATATTCCTATACTCAATATCTCTCCTAATTTCCCTATCT
ACTTACTTTAATCTCCTTTTTTTCTCTTACATCTACCACTTCTTTTAATT
TAGTCTACATATTTTAATCTTCCGTCCATATTTTTCTTACTTTCCGCATA
AATTTCCTTCCTGCATACTTCTAATTGACATCCATCATTATCATTCCCAA
TTACTCCTTATTCATTTCTCTTTCTTTCTCTAATAACTGCTTTTTTATCT
TCTTAATTCCTTAACTTCTATTACTCCTCCGTTTTTATCCTCCCCTCTTC
TACCCCCCATTTTCCTATCCTATATCTATTCTTATTTCTTTCCCTTATAT
TCTTTCTCTATTTACTTATCCATATATCTTTCTTTTCTTTACTTCTTCAC
TTTCATTTCTCCTCTTATCTTCTAACTTCCGTCTCCTTCTCTCTCTCTTC
TCCTTCTTCCCTTCCTCTTCGATTATCTTAATCTTTCTCTATCTTTCTAT
TCTTTCCTTTCTTTTTATTTCCTATTATTATATTTCTACTGTTATTTCCT
TTCCCTTTCATTTATTTTCATCCTTCAACTACATTTTTTCTCTCATTATC
CTTTACACTCCTCTTATTACCACTCCACCTATTCTACACTCCACCCTTTT
CCTCTATTATTTTTCGACTGTAATTTATTGTGTCTTCTCTTTTTCTCCTA
TCCCTATCTATTCTCTCCCTTCTCTCAGCTATTCATACCACCATACTGAT
TATATAACCTTCTATTTCTATACCCTTCCATCTCTGATTAGTTTTTCATA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_e14.b1 MSMg01no107_e14.b1 CHROMAT_FILE:
MSMg01no107_e14.b1 PHD_FILE: MSMg01no107_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:57 2005
         (325 letters)



>mm_chr2_141393013_141393737
          Length = 725

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcctcccaatttgtaatgtagttattttgttctgataattttatgattagacattctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcctcccaatttgtaatgtagttattttgttctgataattttatgattagacattctc 260

                                                                       
Query: 61  atgtctcaatcttcctcatatgaagacataagtgatattatgcagaatatttcaaacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtctcaatcttcctcatatgaagacataagtgatattatgcagaatatttcaaacaat 320

                                                                       
Query: 121 taataatattgttctaaaacaacagaggagaaaacatttatttaattttacttagaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taataatattgttctaaaacaacagaggagaaaacatttatttaattttacttagaacat 380

                                                                       
Query: 181 ttctgacaaattagtaatgaaaactgtggcagattacgttatgagatttgtagcaactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgacaaattagtaatgaaaactgtggcagattacgttatgagatttgtagcaactcc 440

                                                                       
Query: 241 ccttgatatcatgggtattgcttaatatctctattattatttttaataattttaggtctc 300
           ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||
Sbjct: 441 ccttgatatcatgggtattgcttaatatctctattatgaactttaataattttaggtctc 500

                                    
Query: 301 attctcaagtaatggtaagaattgg 325
           |||||||||||||||||||||||||
Sbjct: 501 attctcaagtaatggtaagaattgg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no107_e14.g1 MSMg01no107_e14.g1 CHROMAT_FILE:
MSMg01no107_e14.g1 PHD_FILE: MSMg01no107_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:57 2005
         (205 letters)



>mm_chr2_141503779_141504383
          Length = 605

 Score =  366 bits (189), Expect = e-106
 Identities = 198/201 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagataggtttgataacctgaaacaggaagaaaaggaagaaacaaacaactaccccacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 401 aagataggtttgataacctgaaacaggaagaaaaggaagaaacaaacaactaccagacct 342

                                                                       
Query: 61  ggaaagtttagagagttaagcaaaggaaggtagttctaagtgaaatttggagttcacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggaaagtttagagagttaagcaaaggaaggtagttctaagtgaaatttggagttcacccc 282

                                                                       
Query: 121 catcctcatatgttttttttttctgctcaaatgctctctctagccactctcatgataggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 catcctcatatgttttttttttctgctcaaatgctctctctagccactctcatgataggc 222

                                
Query: 181 acatgaacacattacattgta 201
           |||||| ||||||||||||||
Sbjct: 221 acatgagcacattacattgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)