Query= MSMg01no107_f15.b1 MSMg01no107_f15.b1 CHROMAT_FILE:
MSMg01no107_f15.b1 PHD_FILE: MSMg01no107_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:07 2005
(652 letters)
>mm_chr2_100080093_100081139
Length = 1047
Score = 1197 bits (619), Expect = 0.0
Identities = 643/653 (98%), Gaps = 7/653 (1%)
Strand = Plus / Minus
Query: 1 ttaagatattctacaatatagaaagttctgccttaaaagacacatggcaggataaaagaa 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 847 ttaagatattctacaatatagaaagttccgccttaaaagacacatggcaggataaaagaa 788
Query: 61 aataggcataaggagagaaaacctatcttcaaagataaaaaaaaattagttatagtaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aataggcataaggagagaaaacctatcttcaaagataaaaaaaaattagttatagtaaat 728
Query: 121 taaagtgtaatgactgaaaatgtattaaattctctgtaggagcctcctgatagttaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 taaagtgtaatgactgaaaatgtattaaattctctgtaggagcctcctgatagttaattt 668
Query: 181 ttcccttaaacatccccataaaatctggaactgagaagaactgccctccagggaatataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ttcccttaaacatccccataaaatctggaactgagaagaactgccctccagggaatataa 608
Query: 241 atctaatcatcaaactctgcattctgataaaagctgaactatgaatgtcatgttcattgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atctaatcatcaaactctgcattctgataaaagctgaactatgaatgtcatgttcattgt 548
Query: 301 ccactaaaggtcatttctctgccttatccgtttgcaaagtaatatgtattagccactgat 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ccactaaaggtca-ttctctgccttatccgtttgcaaagtaatatgtattagccactgat 489
Query: 361 taaatttttataggtgtacactatcaagcactttctttggtgttaccttgttccaattcc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 488 taaatttttataggtgtacactatcaagcactttctttggtgttaccttgtt-caattcc 430
Query: 421 cttctgtcactttcagaggtgtctttgtaaagcaatcttgatgacatcattgtccccatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cttctgtcactttcagaggtgtctttgtaaagcaatcttgatgacatcattgtccccatg 370
Query: 481 ttaacaacatccag-taatgttcacttcctagaaaactcatttgatctaacaggacttac 539
|||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 369 ttaacaacatccagttaa----cacttcctagaaaactcatttggtctaacaggacttac 314
Query: 540 aaatactttctcagtattaacctaagctaccctttaccctcatctgtcacctcctacttt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaatactttctcagtattaacctaagctaccctttaccctcatctgtcacctcctacttt 254
Query: 600 tctctggatctttttatgtcctgtcgtcctctggtaacatcagcattcttcag 652
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tctctgaatctttttatgtcctgtcgtcctctggtaacatcagcattcttcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1047
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1037
Effective search space: 665754
Effective search space used: 665754
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_f15.g1 MSMg01no107_f15.g1 CHROMAT_FILE:
MSMg01no107_f15.g1 PHD_FILE: MSMg01no107_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:07 2005
(573 letters)
>mm_chr2_100003917_100004891
Length = 975
Score = 1067 bits (552), Expect = 0.0
Identities = 570/576 (98%), Gaps = 4/576 (0%)
Strand = Plus / Plus
Query: 1 aaaatgatcataatttgaaaactttcctgcacaaatcaagaacttcctaaaatgtgtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatgatcataatttgaaaactttcctgcacaaatcaagaacttcctaaaatgtgtcat 260
Query: 61 ttttactatataatggattgaaatgtgaatttttttaactttctctattctagatgaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttactatataatggattgaaatgtgaatttttttaactttctctattctagatgaaat 320
Query: 121 aataatgatttaactaatgggaaaca-ttagaagttagcaataactccaaaaacaa-ttt 178
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 321 aataatgatttaactaataggaaacatttagaagttagcaataactccaaaaacaatttt 380
Query: 179 ttttaacagaataatagcaagtattttcaatcgattcactctggagtctatgcccaacaa 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttacagaataatagcaagtattttcaatcgattcactctggagtctatgcccaacaa 440
Query: 239 attgtacagtaaaggataatgcagaagacctgaaggtcttccccaacggtcatctgatac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgtacagtaaaggataatgcagaagacctgaaggtcttccccaacggtcatctgatac 500
Query: 299 ttgcctgggaagcatataagaaaaatctgtctcttgaactttagtgcaatttaataccag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcctgggaagcatataagaaaaatctgtctcttgaactttagtgcaatttaataccag 560
Query: 359 ctgatgcaatctgaaagagtaattgatactatgataaacct-aggtattgttttggcctt 417
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 561 ctgatgcaatctgaaagagtaattgatactatgataaac-tgaggtattgttttggcctt 619
Query: 418 agcctgctgagaacaagcattgcagctatgcatcactgtgtcttaccttatcacacacct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agcctgctgagaacaagcattgcagctatgcatcactgtgtcttaccttatcacacacct 679
Query: 478 tcctcttttttccttccagtgtcacagtatcagacatacattacctctttattgagctaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcctcttttttccttccagtgtcacagtatcagacatacattacctctttattgagctaa 739
Query: 538 aatattggtaatatagatgtgatgtttgtggaataa 573
||||||||||||||||||||||||||||||||||||
Sbjct: 740 aatattggtaatatagatgtgatgtttgtggaataa 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 975
Length adjustment: 10
Effective length of query: 563
Effective length of database: 965
Effective search space: 543295
Effective search space used: 543295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
