BAC Information

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BAC

Clone NameMSMg01-108A12
Chromosome2 (Build37)
Map Location 34,694,913 - 34,695,477
singlet/doubletsinglet
Overlap genenone
Upstream gene2610528K11Rik, LOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370
Downstream genePsmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108A12.T7 (MSMg01no108_a12.b1)MSMg01-108A12.TJ (MSMg01no108_a12.g1)
ACCAG321588AG321589
length704698
length of high quality
(start - end)
81 (66 - 146)565 (74 - 638)
definitionCHROMAT_FILE: MSMg01no108_a12.b1 PHD_FILE: MSMg01no108_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:44 2005CHROMAT_FILE: MSMg01no108_a12.g1 PHD_FILE: MSMg01no108_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA
TTCCCTTCCTTACCTGGGACCTGAGAACATCTAATTCATGCATTATTTGT
AGATTGTGTTCCAATGGCTGGGGGGGGGGGGGGGCTGGAGTCCAAGATTC
ACGAGGCAGCACAGGGGACAGCCCGTGCGCAGGCTCCTGTCCACCTCTCC
TGCTTACATCCTTCTCTCCATCCATCTGCTTGTGTATTTGGGCTCCTTTT
GAGAGCATATGAAAATAATATCTGTACACAGACTACTTTTGGAAAAATCC
AGCGCGTTTTATGATTATTTTAGTCATTTTCTGCCTTAAAAAAAATTAAG
TAAATCTAACCCAGCCCCGGCGTCACATGCCTGCAAACTCGGACCTCGGA
ATGCAGAGGCACGCGGATTTCTGACCTTACGGCCAGCCCGATCTACAGAG
TGAGTTCTAGCACAGCCAGGACTTCATATATAAACCCTGTCTTTTAAGTT
ATACAAGGCTCCCTCGTCCCCTTGTTGAATCTGATCTTATAAACTTTAAT
TAGCTGGTTCAATTTCTCATCTTGTATCAGTCTCGCCTTTCTTTGTGTCC
GCTCCTCTTCTTGTGATTTACCCGCTTTCTTATCCCGCACCTTATACCTT
TTTATTGTCTGTCTTACACCTCTCTATCTCTCCTCTCCCTTTTTTTGTCT
TCCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAAC
TCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCGGGGATTAAAGGAGTGC
GCCACCACTGTCCGGCTTTAGATGTCTTCTTCTTAAAGTGCTGTTTTCCT
ATTACAGAAGGCAACTCTCTGGGCCCATGTTAGGTAACTTCTCTGAATCT
ATTCATACCTAGCAAACCCACAAGATGTTCTTAGTGTTCTGATGTACTCA
GTCTTGACATCTTGATTTTGATGTTTAAGTCATTTAAAATAGGACGGTGT
GATACTTTTCAAAATAAAATCTTTCAGAAAAGAGAAAACATTAAATTTCA
TTATAACATATATTATGATGTACAGAGTGTATTTTCTAATTTTGAAAGAA
TACTTATTGTGTGCGCGCATATGCACAGGTGTGTAATATGTGTGTCACAG
GACATGTATGAAGGTCAAAAGTCAGTTCTTCCCTTCCAACATGTGCGTTC
TAGGACGGAACTCAAATCATCAGACTTGACAGCAATCACCCTTGCCCAGT
GAGCCATCTCACTGACCCATACAAGTGACACACAATTAGAACATATTCTG
AATGCCTGAATCCATTTATTTAGCATATATGCTTCCTTACATACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_a12.g1 MSMg01no108_a12.g1 CHROMAT_FILE:
MSMg01no108_a12.g1 PHD_FILE: MSMg01no108_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:44 2005
         (565 letters)



>mm_chr2_34694713_34695677
          Length = 965

 Score = 1023 bits (529), Expect = 0.0
 Identities = 556/565 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgc 260

                                                                       
Query: 61  ggggattaaaggagtgcgccaccactgtccggctttagatgtcttcttcttaaagtgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggattaaaggagtgcgccaccactgtccggctttagatgtcttcttcttaaagtgctg 320

                                                                       
Query: 121 ttttcctattacagaaggcaactctctgggcccatgttaggtaacttctctgaatctatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcctattacagaaggcaactctctgggcccatgttaggtaacttctctgaatctatt 380

                                                                       
Query: 181 catacctagcaaacccacaagatgttcttagtgttctgatgtactcagtcttgacatctt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtacctagcaaacccacaagatgttcttagtgttctgatgtactcagtcttgacatctt 440

                                                                       
Query: 241 gattttgatgtttaagtcatttaaaataggacggtgtgatacttttcaaaataaaatctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattttgatgtttaagtcatttaaaataggacggtgtgatacttttcaaaataaaatctt 500

                                                                       
Query: 301 tcagaaaagagaaaacattaaatttcattataacatatattatgatgtacagagtgtatt 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagaaaagacaaaacattaaatttcattataacatatattatgatgtacagagtgtatt 560

                                                                       
Query: 361 ttctaattttgaaagaatacttattgtgtgcgcgcatatgcacaggtgtgtaatatgtgt 420
           |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 561 ttctaattttgaaaaaatacttattgtgtgtgcgcacatgcacaggtgtgtaatatgtgt 620

                                                                       
Query: 421 gtcacaggacatgtatgaaggtcaaaagtcagttcttcccttccaacatgtgcgttctag 480
           ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 gtcacaggacatgtatgaaggccaaaagtcacttcttcccttccaacatgtgcgttctag 680

                                                                       
Query: 481 gacggaactcaaatcatcagacttgacagcaatcacccttgcccagtgagccatctcact 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 gacggaactcaaatcatcagacttgacagcaatcacccttgcccagcgagccatctcact 740

                                    
Query: 541 gacccatacaagtgacacacaatta 565
           ||||||||||||||||| |||||||
Sbjct: 741 gacccatacaagtgacatacaatta 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)