Query= MSMg01no108_c12.b1 MSMg01no108_c12.b1 CHROMAT_FILE:
MSMg01no108_c12.b1 PHD_FILE: MSMg01no108_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:55 2005
(537 letters)
>mm_chr2_67274787_67275722
Length = 936
Score = 315 bits (163), Expect = 4e-90
Identities = 175/179 (97%), Gaps = 1/179 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaagctggatcgacttttagggaacttagcgtggctgaagtagatcattggagg 64
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 368 gaattcaaagctggatggacttttagggaactta-cgtggctgaagtagatcattggagg 310
Query: 65 gatgagttaataggatgtgttttatctctagccctttctattttgtctttccccacctcc 124
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 309 gatgagttaataggatgtgttttatctctagcccttcctattttgtctttccccacatcc 250
Query: 125 tgtctcctacatgacctcatggtctaccttaatgcacattcactaagaaataatagagt 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgtctcctacatgacctcatggtctaccttaatgcacattcactaagaaataatagagt 191
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_c12.g1 MSMg01no108_c12.g1 CHROMAT_FILE:
MSMg01no108_c12.g1 PHD_FILE: MSMg01no108_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:55 2005
(508 letters)
>mm_chr2_67115337_67116243
Length = 907
Score = 928 bits (480), Expect = 0.0
Identities = 498/508 (98%), Gaps = 8/508 (1%)
Strand = Plus / Plus
Query: 1 taatggtggtatttataaaggaattatatatatacaattacatattaaatttaggtagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatggtggtatttataaaggaattatatatatacaattacatattaaatttaggtagaa 260
Query: 61 ttgagaaattctaaccatgaaattatattcacaattctaataatttgatgaagtgattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagaaattctaaccatgaaattatattcacaattctaataatttgatgaagtgattat 320
Query: 121 aatattaattttaagttgactctcataaggatcattactgtaattattaggacctaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatattaattttaagttgactctcataaggatcattactgtaattattaggacctaacca 380
Query: 181 aataagaagcaatactataaaaaaatctaaaaacaaccaagatatgcagatgctggtcaa 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 aataagaagcaatactataaaaaa-tctaaaaacaaccaagatatgcagatgctggtcaa 439
Query: 241 atataaaatataagataggggtaacaaaccaaaggaacagatgtgcaattaaaaaaagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 atataaaatataagataggggtaacaaaccaaaggaacagatgtgcaattaaaaaaataa 499
Query: 301 ttattacaaaccaaacattcattatctaaacatatcaatagcaccagctgtaagaaagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttattacaaaccaaacattcattatctaaacatatcaatagcaccagctgtaagaaagct 559
Query: 361 gaactttacaagtaaatacagaaagtacccagataaatgaaaaagcaactttcaaaattg 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 gaactttacaagtaaatacagaaagtacccagataaa-------gcaactttcaaaattg 612
Query: 421 cactaattgaattacactataaaaatttaaaaaatagatgcatgcataagcattgaacat 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cactaatttaattacactataaaaatttaaaaaatagatgcatgcataagcattgaacat 672
Query: 481 attcacagtataatgtgagattgaagga 508
||||||||||||||||||||||||||||
Sbjct: 673 attcacagtataatgtgagattgaagga 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space: 446706
Effective search space used: 446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
