Query= MSMg01no108_o11.b1 MSMg01no108_o11.b1 CHROMAT_FILE:
MSMg01no108_o11.b1 PHD_FILE: MSMg01no108_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:55 2005
(569 letters)
>mm_chr2_7245826_7246794
Length = 969
Score = 949 bits (491), Expect = 0.0
Identities = 547/567 (96%), Gaps = 6/567 (1%)
Strand = Plus / Plus
Query: 6 gaattcacctctac--tccttatctagtagatcccaattttatcactcatcattcacatt 63
|||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 gaattcacctctacagta-ttatctagtagatcccaattttatcactcgtcattcacatt 262
Query: 64 tgttgcatcagaaggataataggcagaatgctagcatctccttaatgcagtgttctatgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgttgcatcagaaggataataggcagaatgctagcatctccttaatgcagtgttctatgc 322
Query: 124 ctttaatgtctttagaacatcttcctatagttgttgtgcctcataattgattcaagtccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctttaatgtctttagaacatcttcctatagttgttgtgcctcataattgattcaagtccc 382
Query: 184 ccaaagcaagcactctcataatagctgcatgttaggaaagaggtaatgaaatcataggaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 383 ccaaagcaagcactctcataatagctgcatgttaggaaagaggtaatgaaatcgtaggaa 442
Query: 244 gggccatatctcattagggactcatgtttctcgtggcaaacctcagtggatgcttagtgt 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 gggccatatctcattagggactcatgtttctcgaggcaaacctcagtggatgcttagtgt 502
Query: 304 tgcatttgtttattgttctgtgaagtcaatgaaaaaaaatcacaacacacacacacacac 363
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 503 tgcatttgtttattgttctgtgaagtcaatgaaaaaaa-tcacaacgcacacacacacac 561
Query: 364 acacacacacac--acacacacacacacacacacacaagactatggggccctctggaggc 421
|||| | | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acacgcgcgcgcgcacacacacacacacacacacacaagactatggggccctctggaggc 621
Query: 422 aggagggttataatcttctacgttctcatagcacaaaattggtgctcaggaaaaatgtgc 481
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 622 aggagggttataatcttctacgttcttatagcacaaaattggtgctcaggaaaaatgtgc 681
Query: 482 tggctatcttgtgatgtttacacacatgcttctctgtgatgcactctgcttctggaagac 541
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 682 tggctatcttgtgatgtttgcacacatgcttctctgtgatgtactctgcttctggaaaac 741
Query: 542 agaaccatttgctgtcacaatgagtgg 568
|||||||||||||| ||||||||||||
Sbjct: 742 agaaccatttgctggcacaatgagtgg 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_o11.g1 MSMg01no108_o11.g1 CHROMAT_FILE:
MSMg01no108_o11.g1 PHD_FILE: MSMg01no108_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:55 2005
(641 letters)
>mm_chr2_7411289_7412328
Length = 1040
Score = 1100 bits (569), Expect = 0.0
Identities = 623/641 (97%), Gaps = 1/641 (0%)
Strand = Plus / Minus
Query: 1 ctgaaacttaatgatggattcttgaaaattggccgtgtttatgtattacacggactggga 60
|||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 840 ctgaaacttaataatggattcttgaaaattggctgtgtttatgtattaca-ggactggga 782
Query: 61 agtaggcatgtgctctttatcagctatctttgaattcatcgttccactgaatgattgtga 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 781 agtaggcatgtgctctttatcagctatctttgaattcatagttccactgaatgattgtga 722
Query: 121 gatctggatgagttcgtcattctgtggcgactgcggctttgtatcctcaggctatgtttg 180
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 721 gatctggatgggttcgtcattctgtggcgactgcagctttgtatcctcaggctatgtttg 662
Query: 181 ttatgaccaccactctgagattgtattctctcaaatatggctgactcagtgctatgcaat 240
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 661 ttatgaccaccaccctgagattgtattccctcaaatgcggctgactcagtgctatgcaat 602
Query: 241 agacatttataggtgcttgtggatggtggggcattttgtattcaaataccttacacaact 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 601 agacatttataggtgcttgtggatggtggggcattttgtagtcaaataccttacacaact 542
Query: 301 gaaacctaaagaataaaactactcgtgacttttgaaagtgagctggctatcctgttaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaaacctaaagaataaaactactcgtgacttttgaaagtgagctggctatcctgttaaag 482
Query: 361 aaatctgaaattggataccagcttgtggtcatttgcagggggtcactgaaagttcttgta 420
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 481 aaatctgaaattgggtaccagcttgtggtcatttgcagggggtcactgagagttcttgta 422
Query: 421 aacatcaggatccaccagttcatgagatgaccacaaaaatacagatttgactttcaagga 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacatcaggacccaccagttcatgagatgaccacaaaaatacagatttgactttcaagga 362
Query: 481 atctttggctttactctgtgttgcacaccttttggtaaattaaacaaggtgctaaatgtg 540
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 361 atctttggctttactctgtgttgcacaccttctggtaaattaaacaaggtactaaatgtg 302
Query: 541 ttatctctgacaacagaaaggaatattgtcttacctatttattatgtgtatctagaaccc 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 301 ttatctctgacaacagaaaggaatattgtcttacctatttgttatgtgtatctagaaccc 242
Query: 601 tggtctatgatgttgtatcaggtgtctagtccagattatga 641
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 241 tggtctatgatgttgtatcaggtgtctagtctagattatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space: 649930
Effective search space used: 649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
