Query= MSMg01no108_p12.b1 MSMg01no108_p12.b1 CHROMAT_FILE:
MSMg01no108_p12.b1 PHD_FILE: MSMg01no108_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:00 2005
(570 letters)
>mm_chr2_13244746_13245716
Length = 971
Score = 1042 bits (539), Expect = 0.0
Identities = 560/567 (98%), Gaps = 1/567 (0%)
Strand = Plus / Minus
Query: 5 gaattctcccagctctctgagg-aaatgcgtctgaaagtggccatggccattagagaatg 63
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 771 gaattctcccagctctctgaggcaaatgcgtctgaaagtggccatggccgttagagaatg 712
Query: 64 ctctccatgaaatgccataccattcatggaaataaggagcatggctgtatattcaatttt 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 711 ctctccatgaaatgccataccattcatggaaataaggagaatggctgtatattcaatttt 652
Query: 124 agtcggttacattcaatttcctctttattcctcctgatttacagacagatagtagaaata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agtcggttacattcaatttcctctttattcctcctgatttacagacagatagtagaaata 592
Query: 184 ctcttccatcgatttataaggtcaggggtgttcttctgacaggataaattgggagcagat 243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctcttccattgatttataaggtcaggggtgttcttctgacaggataaattgggagcagat 532
Query: 244 aaatatgcactctccaggaactctgcaaatattaatcatatttccgtgagaagcgattgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaatatgcactctccaggaactctgcaaatattaatcatatttccgtgagaagcgattgt 472
Query: 304 catgaaacctattcaactccgcactgacaggtcttggcctatgtgccaagtgttctgttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 catgaaacctattcaactccgcactgacaggtcttggcctatgtgccaagtgttctgttc 412
Query: 364 atgttagacgatcaaaggtaaagaagactcttaagcagcttaggcaattatcacctccct 423
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 411 atgttagatgatcaaaggcaaagaagactcttaagcagcttaggcaattatcacctctct 352
Query: 424 cctaagagcatacttatttattatcactgtcagcattacatttcttcctcctttacaaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cctaagagcatacttatttattatcactgtcagcattacatttcttcctcctttacaaag 292
Query: 484 cacacagctgaagggagtattaagttggtttcaactctgcttagatatgtgaaagtatgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cacacagctgaagggagtattaagttggtttcaactctgcttagatatgtgaaagtatgt 232
Query: 544 atgaagacccaagctggaacaaactgg 570
|||||||||||||||||||||||||||
Sbjct: 231 atgaagacccaagctggaacaaactgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_p12.g1 MSMg01no108_p12.g1 CHROMAT_FILE:
MSMg01no108_p12.g1 PHD_FILE: MSMg01no108_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:00 2005
(514 letters)
>mm_chr2_13163027_13163940
Length = 914
Score = 955 bits (494), Expect = 0.0
Identities = 506/510 (99%)
Strand = Plus / Plus
Query: 1 ttgaaggagagtaggggaacatacacatcttagtagtgcgactaaataaacttcactttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaaggagagtaggggaacatacacatcttagtagtgcgactaaataaacttcactttt 260
Query: 61 tccctgaaatggtaagttatcattactttctctaatggaaataacataatcagaaggaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctgaaatggtaagttatcattactttctctaatggaaataacataatcagaaggaat 320
Query: 121 gtaaccgaagagaaatttgacttacttgttagcttgttgtggctgagcaccagttgtgtg 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaccgaagagaaatttgactcacttgttagcttgttgtggctgagcaccagttgtgtg 380
Query: 181 atgtgggctagagagactggaaaagaaagaaacaaacaagcagttaggaatgtttacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtgggctagagagactggaaaagaaagaaacaaacaagcagttaggaatgtttacaat 440
Query: 241 cacacttccttctcttctgggtaggctgcaacattatttgcaaaggttgaggcaatgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacttccttctcttctgggtaggctgcaacattatttgcaaaggttgaggcaatgcct 500
Query: 301 ctcaaaacccaagctagaactgtctgctgagcgttaaaccagatgaagaaggcatgccat 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 ctcaaaacccaagctagaactgtctgctgagtgttaaaccagatgaagaaggcatgccat 560
Query: 361 cgatcttgcaattagcacggcaagttgaagctaatgagatccatgtcacaggatcaaaca 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgatcatgcaattagcacggcaagttgaagctaatgagatccatgtcacaggatcaaaca 620
Query: 421 ttacaaggaccacttagcttcacatgaccacctgggtcagctggcctaacttggaccatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacaaggaccacttagcttcacatgaccacctgggtcagctggcctaacttggaccatc 680
Query: 481 catctcaatagggtgtgtctcagaagaact 510
|||||||||||||||| |||||||||||||
Sbjct: 681 catctcaatagggtgtatctcagaagaact 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
