BAC Information

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BAC

Clone NameMSMg01-109B17
Chromosome2 (Build37)
Map Location 105,863,903 - 106,024,280
singlet/doubletdoublet
Overlap geneLOC668765
Upstream geneLOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4
Downstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109B17.T7 (MSMg01no109_b17.b1)MSMg01-109B17.TJ (MSMg01no109_b17.g1)
ACCAG322373AG322374
length726724
length of high quality
(start - end)		370 (43 - 412)214 (75 - 288)
definitionCHROMAT_FILE: MSMg01no109_b17.b1 PHD_FILE: MSMg01no109_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:11 2005CHROMAT_FILE: MSMg01no109_b17.g1 PHD_FILE: MSMg01no109_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,023,915 - 106,024,280)(105,863,903 - 105,864,113)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAAATCCGCGGAAT
TCTGCTTGGTTACCTTCGTGATGAGTCAGATTAGCATAGGTGTCAGTGGG
TAATGCCAGGGAGGGGAACATATGTGGGCAGGGAATCTTAGCAACTTGAG
CATATCAAACACTCTGTGAAAAAGCTAATTGAGAGGTAAAAACAAATTAA
CTGCTACGGAGAAGGACAATCTCCCTGAGCGAGCGAGCGAGCGCCAGCAG
CAGGAAGGTTCAGTGGTTCATTTAGTAGGAGTCACTGCTGGGACCATAAT
ACAGCTCTGGCCCGTGGACTTTCCCTGCTGACTGCCCACCTGGCAATTCT
CTGGGCACCTTCCAGGATGTCAGCGCTGCACAGGCAAAGCCTGTCTCATT
ACTACCCGCGCGTCATGGGAGCTAATGCCGGCACCGATTGCTTTCCCGGG
AGTTCGCTACCAAAGCTGTTTTTCAGTTCAGCACGTGTAAATAGATAAGA
TTGGATCTTTCAGAGCACAAAGATTTACATCTGGCTGCAGATGCCTGTCA
GCTAAAGCAGCCCTGTGAAGATGAGCGTCTGGGATATGAGATGGGCAACT
CAGTGTCCATCTCTAGGTGCTGTCCAGTCCAAGGGTATGGGAAGCACCCC
TCATTGATTCCTGAGACTCGCATTGTCCTCATATTTCCTACCTGTAACAT
GGTTAGCTTATACAAAAGGATTGATC

CCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGGTTAGCCTTCTACTGTAGAAAG
GTCCTTTCAAGTCTCTGAAACAGTGGTCTCCCTGGTGTCTCTTAGGAAGT
TTGAATGTAGCTGCAACTTGTATTTCCTGAATAGTTCACATTTATTTTTG
CAATATATTGGCATAAGGCAGTTTCCATAGTGTAGAGAGTCTATTTCTTT
ATCAGTAGAAAGTAGCAACTAAATAAAGCTAACAACATGGCAGGCAATGG
GGCTTCAAGAACTTTGGCCAAGAGCTCTATCAAAGGTTCTAAATATCTAT
TGTTTAGAACTGATATCTGGCATGTAACCTCTGACTCTAGTCACATCAAA
TCACGCTTTTCTCATCACTCTTGGCTTTTTGAGCAAGCCTTTGAAGATGA
TGCTATTTTTCTCTGCATCTGTGCTTGTGTCCATTCATATACATACTCTC
TCTTGCTCTCTGCATACCCATCGTTCTGGAAGTAACACATAATAGAAGTT
CAGACTATTGATTCTGATGTTTAAAAACAGAAGGCCCGTGCCACCTGTAA
TATATCCTGAGCATAACCTATACGTGAACCTGTATCTTCTGATGTACATC
TGTTGGAAGCATTACTCCCTAATAAGGAGGCAACAAAATGTTAGATGCTG
GTCTTCGAAACATGGCCCTGCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_b17.b1 MSMg01no109_b17.b1 CHROMAT_FILE:
MSMg01no109_b17.b1 PHD_FILE: MSMg01no109_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:11 2005
         (370 letters)



>mm_chr2_106023693_106024462
          Length = 770

 Score =  675 bits (349), Expect = 0.0
 Identities = 362/369 (98%), Gaps = 6/369 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcttg---gttaccttcgtgatgagtcagattagcataggtgtcagtgggtaa 61
           ||||||||||||   ||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattctgcttgggagt---gttcgtgatgagtcagattagcataggtgtcagtgggtaa 532

                                                                       
Query: 62  tgccagggaggggaacatatgtgggcagggaatcttagcaacttgagcatatcaaacact 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgccagggaggggaacatatgtgggcagggaatcttagcaacttgagcatatcaaacact 472

                                                                       
Query: 122 ctgtgaaaaagctaattgagaggtaaaaacaaattaactgctacggagaaggacaatctc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ctgtgaaaaagctaattgagaggtaaaaacaaattaactgctacggagaaggacaatctc 412

                                                                       
Query: 182 cctgagcgagcgagcgagcgccagcagcaggaaggttcagtggttcatttagtaggagtc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cctgagcgagcgagcgagcgccagcagcaggaaggttcagtggttcatttagtaggagtc 352

                                                                       
Query: 242 actgctgggaccataatacagctctggcccgtggactttccctgctgactgcccacctgg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 actgctgggaccataatacagctctggcccgtggactttccctgctgactgcccacctgg 292

                                                                       
Query: 302 caattctctgggcaccttccaggatgtcagcgctgcacaggcaaagcctgtctcattact 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 caattctctgggcaccttccaggatgtcagcgctgcacaggcaaagcctgtctcattact 232

                    
Query: 362 acccgcgcg 370
           |||||||||
Sbjct: 231 acccgcgcg 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no109_b17.g1 MSMg01no109_b17.g1 CHROMAT_FILE:
MSMg01no109_b17.g1 PHD_FILE: MSMg01no109_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:11 2005
         (214 letters)



>mm_chr2_105863703_105864316
          Length = 614

 Score =  408 bits (211), Expect = e-118
 Identities = 211/211 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggttagccttctactgtagaaaggtcctttcaagtctctgaaacagtggtctccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggttagccttctactgtagaaaggtcctttcaagtctctgaaacagtggtctccctg 260

                                                                       
Query: 61  gtgtctcttaggaagtttgaatgtagctgcaacttgtatttcctgaatagttcacattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtctcttaggaagtttgaatgtagctgcaacttgtatttcctgaatagttcacattta 320

                                                                       
Query: 121 tttttgcaatatattggcataaggcagtttccatagtgtagagagtctatttctttatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttgcaatatattggcataaggcagtttccatagtgtagagagtctatttctttatca 380

                                          
Query: 181 gtagaaagtagcaactaaataaagctaacaa 211
           |||||||||||||||||||||||||||||||
Sbjct: 381 gtagaaagtagcaactaaataaagctaacaa 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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