BAC Information

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BAC

Clone NameMSMg01-109L05
Chromosome2 (Build37)
Map Location 115,502,204 - 115,502,319
singlet/doubletsinglet
Overlap geneBC052040
Upstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236
Downstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109L05.T7 (MSMg01no109_l05.b1)MSMg01-109L05.TJ (MSMg01no109_l05.g1)
ACCAG322820AG322821
length773789
length of high quality
(start - end)
116 (81 - 196)---
definitionCHROMAT_FILE: MSMg01no109_l05.b1 PHD_FILE: MSMg01no109_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:01 2005CHROMAT_FILE: MSMg01no109_l05.g1 PHD_FILE: MSMg01no109_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATAGCGCGG
AATTCTTGTTGGTTTCCCAAATCAGATGTTCTTCTCCCTTTTCCTTGCAT
CCTGCCTGCTACAATCCATCCATCCATCTTCCATTTTTCTACTTGAGTCT
TTTCTCACTGAAATTCCTCTCTTCTGCTAGCAGATTCTTTCTAGGTAAAC
AGCTCATACTCAGTAGCATCTTTTATGGCCCAAACTAAAGTCAGTCAACA
TACTGCTATGATACTGGTCCATACATGTAACTTTCAGAAATAGTAGTGAA
AAGACAACTTTCCTAGTAATTTGTTTATCATCCACATAGTCTTTTTTTTT
TTTTTATATTTATTATATAATTTAAATACCACGTCTTATACCTTATTGAT
TCTCTGTTTAGTGATCGTGTGGCTAGTGTTCTACTCTCGGCTCTACTCAT
AATTCTTTTTTTTGTTAGGTTCTTGTTTTGATTGTTCTGTTTTGCTATTA
TAATCTTTGCTTTGTGTGTTTATTGAATCACCTTTATAATTTCTTTAGAA
TTGGTCTACTAATGATCTTCTCTTTAATTGGATTTCCACCGCTTACCATC
GTTATAAAACCTTATCAAACCTATTCAACGATACCCTTACTTGTCTAACA
TCTTTAGTAACTATCTATATATTTTATTCCATTAACATAAAAATTATATA
ATTATATTTAAACAATAAATAAATATTATAAAACATAATTAAATAATATA
ATAAATATAACAATTATCCCGGA
ACGATGATGTGAAGAGCCTGGCGGAAGACTGGTTTTCGAATATAAGGTGA
ACTATAGAAGGATTTGCGGAATACAAGGCCAGGCAGACCTACGGAGGAAA
AGTCTATCTCCAGAAAAGAATGAATGTGAAAGAATCAAAACAACAATAGC
AGCAGCAGCATCTGTAGCAGTTGACTTGACTTTAATTTAATCGTAAGAAT
TTAGATTTATAGAAAGACTAATAGTATATTCTAAATGATAAGAATTGGTG
GAGTATATTGATATTTCTTTGTTAAGGTTGCAAGAGAGACTGAAAATGAA
AGATTAGAACAACATCGAAGTAAAGAAAAATTGTAAAAAAAGGAAGCGCA
GGCAAGCGCACATAATTCATTATTTTTCCACCCCCCTACCCCCCTATTTG
TTTATCTCATAAACGACACGGTTCTTTTCGTCTCCTTCCTACTGCGCCGC
TTATTTAGAGCAGCGGCGCCGCGAACCCCGACGATTTTTTACCTGCCGTC
TTCCTAATAGCTCAGTTTATATGTTAATATTATATTCGTATGTTAAAGAT
AAAATTATATAATGAATGTATTAAGGGCTAACGAAAATTAATCTTAATAT
TTTATAATATCAACACCACCAGATGGCCGCATCTAGTATTTGGAATACAC
AAGACACCATGAGATATTTAACTGAAAGAATGAAGGGTAAAAATATATAA
ATAAGTCATAACTCAAATTATTAACTATATAAGCAAAAGGTATAAAAACG
ATCTAAATATTACGAACTATAATTATCAGTATAGTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_l05.b1 MSMg01no109_l05.b1 CHROMAT_FILE:
MSMg01no109_l05.b1 PHD_FILE: MSMg01no109_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:01 2005
         (116 letters)



>mm_chr2_115502004_115502519
          Length = 516

 Score =  209 bits (108), Expect = 5e-59
 Identities = 114/116 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctcccttttccttgcatcctgcctgctacaatccatccatccatcttccatttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctcccttttccttgcatcctgcctgctacaatccatccatccatcttccatttttct 260

                                                                   
Query: 61  acttgagtcttttctcactgaaattcctctcttctgctagcagattctttctaggt 116
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 acttgtgtcttttctcactgaaattcctctcttctgcaagcagattctttctaggt 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)