Query= MSMg01no110_g13.b1 MSMg01no110_g13.b1 CHROMAT_FILE:
MSMg01no110_g13.b1 PHD_FILE: MSMg01no110_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:59 2005
(386 letters)
>mm_chr2_180336081_180336867
Length = 787
Score = 702 bits (363), Expect = 0.0
Identities = 378/383 (98%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagtgaagatgctcagactcagggatgtgaagtggcttttcccatgctcagagg 63
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 586 ggaattcagtgaagatggtcagactcagggatgtgaagtggcttttcccatgctgagagg 527
Query: 64 agggacgcctgtgctcccatcaccaccacacagctccgcctgctctgaatgccaagttga 123
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 526 agggacgcctgtgctcccatcaccgccacacagctccgcctgctctgaatgccaagttga 467
Query: 124 tgctgaccaggtgtagctgtgggacttctgt-gggggggaggacccaggggatgtgcact 182
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 466 tgctgaccaggtgtagctgtgggacttctgtggggggggaggacccaggggatgtgcact 407
Query: 183 cagcatccccccaccccccaaagtggagcaatggcacagggcccagtcagttgtgaacac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 406 cagcatccccccaccccccaaagtggagcaatggcacagggcccagtcagttgtggacac 347
Query: 243 catccacagaattcctaccctgatggccttgtgagccacctgggaacctaaccttgggac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 catccacagaattcctaccctgatggccttgtgagccacctgggaacctaaccttgggac 287
Query: 303 agcagctattggaattagacacttacccgttctccaggggcacctttgggtcctgcgggt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agcagctattggaattagacacttacccgttctccaggggcacctttgggtcctgcgggt 227
Query: 363 ccatctctccctgtcagaccctg 385
|||||||||||||||||||||||
Sbjct: 226 ccatctctccctgtcagaccctg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 787
Length adjustment: 9
Effective length of query: 377
Effective length of database: 778
Effective search space: 293306
Effective search space used: 293306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_g13.g1 MSMg01no110_g13.g1 CHROMAT_FILE:
MSMg01no110_g13.g1 PHD_FILE: MSMg01no110_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:59 2005
(541 letters)
>mm_chr2_180194915_180195854
Length = 940
Score = 969 bits (501), Expect = 0.0
Identities = 531/541 (98%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 1 tactagacatcccacctttaggactttacaatgtcctgggaacatcctacagagatccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactagacatcccacctttaggactttacaatgtcctgggaacatcctacagagatccag 260
Query: 61 gtagcagagatctggggcagaggactactctgaaattcttcctttcaaattgcagcatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagcagagatctggggcagaggactactctgaaattcttcctttcaaattgcagcatga 320
Query: 121 gctgagaggccttagggactgctccagttgggagttcagtaaatggatggataaggaagt 180
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct: 321 gctgagaggccttagggactgctccagctgggag-tcagtaaatggatggataaggaaat 379
Query: 181 aaaggagcaaggaagagagtgcagccatgcggaggccagagaccttttctcacagattag 240
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 aagggagcaaggaagagagtgcagccatgcgaaggccagagaccttttctcacagattag 439
Query: 241 gtggtagcaagttgcctctggccactgacctttctgggaggctctgaggaggcagccaga 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtggtagcaagctgcctctggccactgacctttctgggaggctctgaggaggcagccaga 499
Query: 301 gctggctggattcttccagaactaaaagacatcatcaactaaaggctgcaattgcagccc 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctgtctggattcttccagaactaaaagacatcatcaactaaaggctgcaattgcagccc 559
Query: 361 tgaagacagtgcaggggacgtgtaagggaatcttggtcacctgtgacctcctaaaataac 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgaagacagtgcaggggacttgtaagggaatcttggtcacctgtgacctcctaaaataac 619
Query: 421 gcacatacattacccacgcctatgcacacgcctgcccttcccacagtgctcaggtgtggc 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcacatgcattacccacgcctatgcacacgcctgcccttcccacagtgctcaggtgtggc 679
Query: 481 cattgtcagctgcccgaggccccagggcttcatcatcccgggctaatcagcttggcctaa 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cattgtcagctgccagaggccccagggcttcatcatcccgggctaatcagcttggcctaa 739
Query: 541 t 541
|
Sbjct: 740 t 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 940
Length adjustment: 10
Effective length of query: 531
Effective length of database: 930
Effective search space: 493830
Effective search space used: 493830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
