NNAACATTAACNNNNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCCGNAGAGAGATCCGCGNNGAATTCCGACAAGTCTCACGGGAGCAT
GGCNTTATTTTTAGCAGAAGCATCCCCCAAGAAAAAGAAAAAGTCCAATG
TCAGGTACTGAAGAGGGCTAATTTATGGAGCGGCTGACAGGGATGCCCCT
GGTTTTAATCTTTTAAGAATTCTTTCAAGGAAAAAACTCTACCCAAAATT
CCCAAGGTTAGGTATTTTAACTTTTCAAAGAATCCTTTTGGGTGCGAAAA
AATTTTGGGAAGCCCCCCCTTGGTTTGTTTTTAACAACCCCAAAAAAAAA
AAAATAGTGGTGTTTTTTTTTAAAACCCTTAATTTTTTTTTTAAAAGGGG
AAAAATTTTTTTGTGGTGGGGGGTTATAATAACAAAAGAAAAAAATAATT
CTGTCCACTTATAAAAAAAAATAAAACCCCGCGCGCCCTCTTTTGTAAAG
AGGGGCGTCTTTTTATAAAAAAATTTTTTTTTTCTTTTTTAATTTATATA
TTAGGAAAATAATCTTCTCCCTTTTTCCCTCGGTGCGGGTATTTAATTCT
CGCGCACTTCTTCTTTTTTTATATTAAATATACAATCTTCCTTCTCTCCC
CATCTGCGTCTCTGTATCTAATAACTCTTCTACTTCTCCGCTTTTCGTTT
CTTATTAGAAACATCTACTTTTN

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCCTCCTGGCTACAGGATAGGAAGAT
GATGTAAGCTGGCTCAGTTGGAGAGAGACAGAGAGAGAGAGAGACAGAAA
GAGAGAGACAGAGAGAGACACAGAGAGAGACAGAGAGAGACAGAGAGACA
GAGAGAGACAGAGACAGAGACAGAGAGAGAGACACAGAGAGAGACAGAGA
GAGACAGAGAGAGACACACAGAGAGAGACAGAGACAGAGACAGAGACAGA
GAGAGACAGAGAGAGACAGACAGAGATACAGAGAGAGACAGATACACAGA
GAGAGACAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGCGAGAGAGA
GAGAATTCTTGTGTGTGTTTGTTGAATGGTTAAGGAAATAGAACTAATCA
ATGTCAACATCAATGTAAGTCTTCACAGAGGGACAGAAAGACATCTATGG
AAAGTATCATTCTTAAGACTACAGTCGTGCCTAAAGTACAGAACACTTCT
GGAAAAGTCAATTTTATTTGGCAATCAGAAAGAACATCTTCACTAATTTG
TGTTCCCATATGGCACAGCCCGACTCCTTTACCTATTTAAGTCAAACCCA
CCCTTCTAGGCAAAGCACAAAACTTGTCTGTTGCAATGTAGACACCTTCT
GTTTCTGTTC

Query= MSMg01no110_n13.g1 MSMg01no110_n13.g1 CHROMAT_FILE:
MSMg01no110_n13.g1 PHD_FILE: MSMg01no110_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:33 2005
         (604 letters)



>mm_chr2_114090209_114091212
          Length = 1004

 Score =  936 bits (484), Expect = 0.0
 Identities = 595/666 (89%), Gaps = 62/666 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcctcctggctacaggataggaagatgatgtaagctggctcagttggagagagacaga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 catcctcccggctacaggataggaagatgatgtaagctggctcagttggagagagacaga 198

                                                                       
Query: 61  gagagagagagacaga-------a-agagagagacagagagagacacagagagagac--a 110
           |||||||||||| |||       | ||||||||||||||||||||||||||||||||  |
Sbjct: 199 gagagagagagagagagagagagacagagagagacagagagagacacagagagagacaga 258

                                                                       
Query: 111 gagagagacagagagac--agagagagacagagac--------agagacagag------a 154
           |||||||||||||||||  ||||||||||||||||        ||||||||||      |
Sbjct: 259 gagagagacagagagacagagagagagacagagacagagagagagagacagagagagaca 318

                                                                       
Query: 155 gagagacacagagagagac--agagagagacagagagagacacacagagagagacagaga 212
           |||||| ||||||||||||  ||||||||||||||||||||| | |||||||||||||||
Sbjct: 319 gagagagacagagagagacagagagagagacagagagagacagagagagagagacagaga 378

                                                                       
Query: 213 cagagacagagac--------------agagagagacagagagagac----------aga 248
           |||||||||||||              ||||||||||||||||||||          |||
Sbjct: 379 cagagacagagacagagagagacagagagagagagacagagagagacagacagagagaga 438

                                                                       
Query: 249 cagagatacagagagagacagatacacagagagagacagagacagagagagacagagaga 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagagatacagagagagacagatacacagagagagacagagacagagagagacagagaga 498

                                                                       
Query: 309 gacagagagag-c---------gagagagagagaattcttgtgtgtgtttgttgaatggt 358
           ||||||||||| |         ||||||||||||||||| ||||||||||||||||||||
Sbjct: 499 gacagagagagacagagagagtgagagagagagaattctggtgtgtgtttgttgaatggt 558

                                                                       
Query: 359 taaggaaatagaactaatcaatgtcaacatcaatgtaagtcttcacagagggacagaaag 418
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 559 taaggaaatagaactaatcaatatcaatatcaatgtaagtcttcacagagggacagaaag 618

                                                                       
Query: 419 acatctatggaaagtatcattcttaagactacagtcgtgcctaaagtacagaacacttct 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acatctatggaaagtatcattcttaagactacagtcgtgcctaaagtacagaacacttct 678

                                                                       
Query: 479 ggaaaagtcaattttatttggcaatcagaaagaacatcttcactaatttgtgttcccata 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggaaaagtcaattttatttggcaatcagaaagaacatcttcactaatttgtgttcccata 738

                                                                       
Query: 539 tggcacagcccgactcctttacctatttaagtcaaacccacccttctaggcaaagcacaa 598
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 739 tggcacagcccgactcctttacctatttaagtcaaacccacccttctaggtaaagcacaa 798

                 
Query: 599 aacttg 604
           ||||||
Sbjct: 799 aacttg 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 287
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)