BAC Information

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BAC

Clone NameMSMg01-110O01
Chromosome2 (Build37)
Map Location 156,181,937 - 156,182,289
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707
Downstream geneLOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110O01.T7 (MSMg01no110_o01.b1)MSMg01-110O01.TJ (MSMg01no110_o01.g1)
ACCAG323691AG323692
length713722
length of high quality
(start - end)		514 (48 - 561)486 (90 - 575)
definitionCHROMAT_FILE: MSMg01no110_o01.b1 PHD_FILE: MSMg01no110_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:36 2005CHROMAT_FILE: MSMg01no110_o01.g1 PHD_FILE: MSMg01no110_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATATTGTCTTGACTAATTTTTAATGCTGTGATAAGAACACTT
GGCTGAGGCCGGGCGTGGTGGCGCATGCCTTTAATTCCAGCACTCGGGAG
GCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG
AGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCCAGAAAACA
AACAAACAAACAGACAACAAAAAAGAAAAAGGAAAGGAGATTTAGAGTAA
AGAATGCTACTAGAGACAAAGAAGTTCATTTTAGGCCAAGAACGTAGCTC
GTGGCAGACCTGCCTGGTCTGTGCAGTCTGGGGTTCAAAGTCTAACACCT
CAAAAAAAAAAAGTTCATTTTTCTTGTCTTGAAGAGGTCAATTCTGTGGC
TCCCTAGGACCTTGAAGTCAACATCAGGTGACAATAAAGAGGGGGTGGGG
AGAGGGAGAGAACACAGTAGCTGCAGATTTTCTCAGCTCTGAGTTAACAG
CTGACTGAGCAGGGCAGATAATCAGGAAGGCCACAGGCCACTTGGCTAAC
ATCCCCCATCCCAGCTGACTAACATGCGCGGCACGCAGCACCACATAACA
GCATATTCTTGTCAGATGCAAATGGAGCATTTACCACGATAGATTGCTTT
CTGGGCCATAAAA

NAAGCCACCCCNNCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTTTTCTG
AATTGCCAATTGCTCACATTTAGTTAGTGATTTGCTCTGTGCCAAGCCTA
AATCTAAAAGATTTACATGCAACAAACACATCACAGGACTCTGAGTTGGC
TACTTTTATTATGCCCATCTTATGTACAGGGCAACAGGAACAGAGCAGGT
GTAAGTGGTAAGTTTGGGATCTACTTGGCATTTGTGTTGAAGGTCTCACG
TGACCCAGACTGGCTTTGAATTTACCATGAAGCAAAGGATGCCTCTTCAT
CTTCCTGCCTCCACTTCCCAAGATTGTAGGTTTGAACTGTAATGCCCTGC
TTATGGGATTTGAATATAGGTGGTCTCATCTTATAATCTTAATATTCAAG
ATGCTCAGGTAGCAGGATTGCTGCAAGATCGAGGCCCACTGTGCTACAAA
GTTAAGACCTTGCCCCCAAAAGTAAGAGAGGGCTGGAGCTGTAGTTCATG
AAGAAGGGACAAGGAAAACAGCAGTAACAGTAATGCATAGTCGGCTTGTA
GCTGCTTCTGGCTAGCAGCGTGGCTATTTTTTATTATTATTTTAAAAATA
TTTTACTGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCATAAGGCA
GAAGCAGGCAGATTTCTGAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_o01.b1 MSMg01no110_o01.b1 CHROMAT_FILE:
MSMg01no110_o01.b1 PHD_FILE: MSMg01no110_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:36 2005
         (514 letters)



>mm_chr2_156181376_156182289
          Length = 914

 Score =  656 bits (339), Expect = 0.0
 Identities = 351/355 (98%), Gaps = 2/355 (0%)
 Strand = Plus / Minus

                                                                       
Query: 160 aggacagccagggctacacagagaaaccctgtctccagaaaacaaacaaacaaacagaca 219
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 914 aggacagccagggctacacagagaaaccctgtctccggaaaacaaacaaacaaacaaaca 855

                                                                       
Query: 220 acaaaaaagaaaaaggaaaggagatttagagtaaagaatgctactagagacaaagaagtt 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 acaaaaaagaaaaaggaaaggagatttagagtaaagaatgctactagagacaaagaagtt 795

                                                                       
Query: 280 cattttaggccaagaacgtagctcgtggcagacctgcctggtctgtgcagtctggggttc 339
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 794 cattttaggccaagaacgtagctcgtggcagacct-cctggtctgtgcagtctggggttc 736

                                                                       
Query: 340 aaagtctaacacctcaaaaaaaaaaagttcatttttcttgtcttgaagaggtcaattctg 399
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaagtctaacacctc-aaaaaaaaaagttcatttttcttgtcttgaagaggtcaattctg 677

                                                                       
Query: 400 tggctccctaggaccttgaagtcaacatcaggtgacaataaagagggggtggggagaggg 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tggctccctaggaccttgaagtcaacatcaggtgacaataaagagggggtggggagaggg 617

                                                                  
Query: 460 agagaacacagtagctgcagattttctcagctctgagttaacagctgactgagca 514
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agagaacacagtagctgcagattttctcagctctgagttaacagctgactgagca 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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