BAC Information

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BAC

Clone NameMSMg01-110O12
Chromosome2 (Build37)
Map Location 152,730,990 - 152,731,472
singlet/doubletsinglet
Overlap genenone
Upstream geneAngpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2
Downstream geneMylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110O12.T7 (MSMg01no110_o12.b1)MSMg01-110O12.TJ (MSMg01no110_o12.g1)
ACCAG323713AG323714
length737734
length of high quality
(start - end)
486 (60 - 545)401 (84 - 484)
definitionCHROMAT_FILE: MSMg01no110_o12.b1 PHD_FILE: MSMg01no110_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:38 2005CHROMAT_FILE: MSMg01no110_o12.g1 PHD_FILE: MSMg01no110_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGTTCTACNATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCGCCAGGCACCCCCTCATTCTTATGGTCACCC
AGCTTAGTTAGCCAAGAGACCTGGAGCTTTAAAAATAGCTCAGAGGCAAG
CCAGGCCAGGAGCCGCCTGTCCACACAACAGGACAGAACACGCATTCCCC
ACTTCTTGAGCCATTTCCTGGGATCATGTGTTGAGAATAACTCCCAGAAC
AGGTTACTGACTCCCGGGTCTGAACTCTGCCCGGTGCACCACTCTAGGAC
CCATCTGCACATCACCCTGTCGCTCTGCAATCCCATGCACTGTGCTCAAG
CCTGCTCCAGGGACATTTCCTGTTCTTGGAACAGCTGCACCAGACTGGGG
TACCCTTCTGCCATTTGATCCTATAGGCAGCCATCCAGTGGCTGTGGGCA
ATTTTCAGATGACCTTGTTCCTCTGACGTCATTGGGGAGCTATTTTTAGC
TTTGCTGTTTATGCTGCAGAAGTTAGGCTGGGGTGGGGGAAGGAGCAGGG
TAGGGCCTGCCCCTCCTATCTCACTCGTTTTACTCTTCTATTTTTTGTCG
TTCTGTTTCTTTGCCCCCCCCCTATGTCCTCCTGCATCCCCTTCTGCACA
CGTTACTTCTTATCCTCCCTTTGTCTTCTTATTCTTTTCCTCTTTTTTTT
TTATTTTCGTCTCCTCTCTTACTCCTTTCGCCCCTCA
TTTCGTTCTTGGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATCCTTCTGCCTCC
ACTGCCTTCCTCCCTCCCTTTAGGCGTCATCATGCCTGGTTTAGATTTCA
GTCTTAAAGTACATATTGTCTGTAATCCCAACACTTGAGGGGTTGAGTCT
GGAGGACCACAAGTTCAAGGCCAGCTTGGGCTATGAAAAGAGACTTTGTG
TAGGAAAAAAAAAAGTCAAATAAAATACAATAAAAACACTAGAGGTGGGG
GGAAGCTGGAGAGACAGCTCATTGGTTCTACGCACTGGCTTCTTTTCCAG
ATGACCGGGGTTCTATCCCTAGCACCCACATGGCAGCTCACAACTGTTTG
AGCCTTCATTTTCAGGGGAGCACAGCACTTTCTTTTATGGGCACTGCACT
CACATGGTACACAAACATATTTGCAGACAATGCATCCACGTAGATAAAAA
TGCATATAAGTAAACATACTCTCACTTTCACTTTCCCACCTACACATCTT
CACATCTACTTTTCGGACTTTTTGAAACGCTGTACATTCATTAGAATGTT
CACATGCTTACTACATATTCCCTGATATCCCTTTGTCTCCCATGCGAAAT
AGTTTGATGTTCGCCTGGCCTGGCCCTATACCGGTATTCTTCTTTTGCTA
CTTTTTTTCTAGTCACTACCACTATTTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_o12.b1 MSMg01no110_o12.b1 CHROMAT_FILE:
MSMg01no110_o12.b1 PHD_FILE: MSMg01no110_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:38 2005
         (486 letters)



>mm_chr2_152730787_152731672
          Length = 886

 Score =  866 bits (448), Expect = 0.0
 Identities = 475/484 (98%), Gaps = 2/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcgccaggcaccccctcattcttatggtcacccagcttagttagccaagagacct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcgccaggcaccccctcattcttatggtcacccagcttagttagccaagagacct 263

                                                                       
Query: 64  ggagctttaaaaatagctcagaggcaagccaggccaggagccgcctgtccacacaacagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggagctttaaaaatagctcagaggcaagccaggccaggagccgcctgtccacacaacagg 323

                                                                       
Query: 124 acagaacacgcattccccacttcttgagccatttcctgggatcatgtgttgagaataact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acagaacacgcattccccacttcttgagccatttcctgggatcatgtgttgagaataact 383

                                                                       
Query: 184 cccagaacaggttactgactcccgggtctgaactctgcccggtgcaccact-ctaggacc 242
           |||||||||||||||||||||||||||||||||||||||||||| |||| | || |||||
Sbjct: 384 cccagaacaggttactgactcccgggtctgaactctgcccggtgtacca-tgctgggacc 442

                                                                       
Query: 243 catctgcacatcaccctgtcgctctgcaatcccatgcactgtgctcaagcctgctccagg 302
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catctgcacatcaccttgtcgctctgcaatcccatgcactgtgctcaagcctgctccagg 502

                                                                       
Query: 303 gacatttcctgttcttggaacagctgcaccagactggggtacccttctgccatttgatcc 362
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 503 gacatttcctgttcttggaacagctgcaccagactggggtaccctcctgccatttgatcc 562

                                                                       
Query: 363 tataggcagccatccagtggctgtgggcaattttcagatgaccttgttcctctgacgtca 422
           |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tatagggaggtatccagtggctgtgggcaattttcagatgaccttgttcctctgacgtca 622

                                                                       
Query: 423 ttggggagctatttttagctttgctgtttatgctgcagaagttaggctggggtgggggaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttggggagctatttttagctttgctgtttatgctgcagaagttaggctggggtgggggaa 682

               
Query: 483 ggag 486
           ||||
Sbjct: 683 ggag 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)