BAC Information

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BAC

Clone NameMSMg01-111A01
Chromosome2 (Build37)
Map Location 105,334,285 - 105,492,754
singlet/doubletdoublet
Overlap genePax6os1, LOC100043391
Upstream geneHipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1
Downstream genePax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111A01.T7 (MSMg01no111_a01.b1)MSMg01-111A01.TJ (MSMg01no111_a01.g1)
ACCAG323782AG323783
length1,1711,148
length of high quality
(start - end)		636 (81 - 716)616 (114 - 729)
definitionCHROMAT_FILE: MSMg01no111_a01.b1 PHD_FILE: MSMg01no111_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:46 2005CHROMAT_FILE: MSMg01no111_a01.g1 PHD_FILE: MSMg01no111_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,492,119 - 105,492,754)(105,334,285 - 105,334,899)
sequence
NTTTTATCATTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATT
CAATGAAAAGGAAGCCCCATTAAGGCTCAGTGGTGTGTGTGAATATTGAC
GTGAGCTCTAAAGGTAGCAAGTGGGGTTAGAAAGGCCAGGCATGATGGTG
CCTGCTATAATTCCATCACTTAAAAGGCTGAAGCAGGAGGATCCCTGCAA
GTTCAAGCCCAGCATGGTCCATATAGTGAGTTCCAAGGCTCCCTGGGATA
GCAAATGAGATTTTGTCTCACAAAGCAGAAAAAAACAAACAATAAGGTGG
TCATTGCAGAGAGATAGAAGAGATGGTGAGAGATGTGAACTGGCACCTTC
TCGTGTAAGAGCATATGATTGGAGGGAGAAGTCACAACTTGGAAATACAG
ACTAGAAGCATCATGGGCAGGATGAATGCTAGACAGAAGGAAGTCATGGA
GCAGCAGAAGTCATTAAGAGAGGGACACCAGCCACCTCGTGGGTAGGAGG
TACACACAAGCATGAGAGCCAATAAATAGTTCATTGCTTCTTGGCCTTTT
GGATAAATCAACCGTGTCTCTAGTCTTATCACCTTGATACTTTTTATGTC
CATTAGCTGGGGCGCCCAGATCAGGTGGAATTTTGCAGCAGGAAGAAGTC
TGCTCCATGAGCCAACCTGGTATTACACAAACTCCAAGAACAGAACACCT
CAAGGTTCAATTGGAAAATGAAGTCATTGAAGTTATTGGTGGGCAATTTT
AGGTAAGATTGGGACACAGATTTTTTTTTAAAAAGATTTATTTATTATAT
ATAAGTACACTTTTATTTGCCCTTAGACACATCATAAGAGGGCATCCGAT
CTGATTATAGATGGCTGTGAACCCCCATGTGGTTTGCTGGGAATTGAAAC
CCAGGAACCTCTGGAAGTGCCTCTTAACCGCTGAAGCCATCTCTTCCAGC
CCCTGGGTCACAGGGTTAAAGCTGCACAGGGGATAGGTCAGAACTCTGGC
AAAATCTGAAGTGACAAGAAGGAAAGTTAACCCCCCTGGAACCAAGGTTT
CCCAAATGAAAGAAACCAGGCCTTTTCCGGGTACTATAAATAGTGTTAAG
GGGTTCCCCTTCTAAAAAAGAGGTTTAATAAAGTAATCCTGTGTGAAAAC
CTTATAATGGTCTCTCCGAGG

CCTATGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCCTTTAAGCCCGAGTTCCAGGCCTGATTATTAATCACGAG
CCCTTCATTTACCTTCTAGAACACTCAACTTCTTCTTCCAAAACATCAGA
GCCACACTAGGTGAGATTTAAATGCATACGAAGTACTGAGCTCTAAACCA
AGTACCCATGTCTACAAAACCTGCAAATAAAATTTGCATTCACATCGTAA
AAGTGCTCCCTGCAACACTCACACCTCTACCAACTTCATTTTCAGACTGT
AGAGCAAGCGAATTGTTAGCCAATGTAGCCTGGTCTTCACAGTGCTTGTT
CAGTTAGCAGGTACAGCCTTCAGCGACAGTGCAAGAAGGTATTCTAGAGG
CCATCAATAATATTCCTCCAAGTTCTTGTGGGGGAAGCGGTAATTTGTTC
CCTAATATGCAGGAGTGACTTATCTTCAGTGGCTGAGACCCTATCAGTCT
TCAGAGGTGGTTGTAATTAATAGGTAAGGAAGTGTAAATACATTTGAATT
AATAGAGCCACTAGGCGTGACTAACTATAATATGATTACCTGTCAAATTA
ACCCAGAGATCAAACTTAATCAATCCAGACTAATAACTGCCAGGACAACA
GTTTTGTGGCCTTAGCTGAGTTTACCTCGAAAGGAACTAAGGAAAATGGA
CTCGGTTAAAATGTAAAGCCTGTGTTTTTTAAAGTGTGAATAACACACTA
CGATTATAAACATGTATGTAGATGATATTAATGTCCAGATGTCGGATAAC
CCCCCCATTTATTTATATTGACAAGTGAGAGTAAACCCGATTAGACAAAT
CCCAAATTAGGACCGGGGTTACCATAAAATTTAAAGAACTGTACCGAATT
TAAACCTGAATCCGAACAGTCCTTTGGATTGGCCCCTTTCCTTAGCTTAT
GCAAATTTCCCGCAACCTCAAAAAGGTATTTAATCAAGAATCTTAATGTA
ATGGCAACATTATAAGTTTCCATATGAACCAAGTTACCTGAACCTTTCTG
GGGGGGGTTCAAAAGCCCTCCCTTTAAGGCTCTAACATGGAAACTTCCCT
TGGGTAAGGGCCTTTTGTCCAGTTCCCCGGTTCCTCCGGGTTTTAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_a01.b1 MSMg01no111_a01.b1 CHROMAT_FILE:
MSMg01no111_a01.b1 PHD_FILE: MSMg01no111_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:46 2005
         (636 letters)



>mm_chr2_105491894_105492929
          Length = 1036

 Score = 1214 bits (628), Expect = 0.0
 Identities = 634/636 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgtgtgtgaatattgacgtgagctctaaaggtagcaagtggggttagaaaggccagg 60
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 861 tggtgtgtgtgaatattgacgtgagctggaaaggtagcaagtggggttagaaaggccagg 802

                                                                       
Query: 61  catgatggtgcctgctataattccatcacttaaaaggctgaagcaggaggatccctgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catgatggtgcctgctataattccatcacttaaaaggctgaagcaggaggatccctgcaa 742

                                                                       
Query: 121 gttcaagcccagcatggtccatatagtgagttccaaggctccctgggatagcaaatgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttcaagcccagcatggtccatatagtgagttccaaggctccctgggatagcaaatgaga 682

                                                                       
Query: 181 ttttgtctcacaaagcagaaaaaaacaaacaataaggtggtcattgcagagagatagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttgtctcacaaagcagaaaaaaacaaacaataaggtggtcattgcagagagatagaag 622

                                                                       
Query: 241 agatggtgagagatgtgaactggcaccttctcgtgtaagagcatatgattggagggagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatggtgagagatgtgaactggcaccttctcgtgtaagagcatatgattggagggagaa 562

                                                                       
Query: 301 gtcacaacttggaaatacagactagaagcatcatgggcaggatgaatgctagacagaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcacaacttggaaatacagactagaagcatcatgggcaggatgaatgctagacagaagg 502

                                                                       
Query: 361 aagtcatggagcagcagaagtcattaagagagggacaccagccacctcgtgggtaggagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtcatggagcagcagaagtcattaagagagggacaccagccacctcgtgggtaggagg 442

                                                                       
Query: 421 tacacacaagcatgagagccaataaatagttcattgcttcttggccttttggataaatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacacacaagcatgagagccaataaatagttcattgcttcttggccttttggataaatca 382

                                                                       
Query: 481 accgtgtctctagtcttatcaccttgatactttttatgtccattagctggggcgcccaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accgtgtctctagtcttatcaccttgatactttttatgtccattagctggggcgcccaga 322

                                                                       
Query: 541 tcaggtggaattttgcagcaggaagaagtctgctccatgagccaacctggtattacacaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggtggaattttgcagcaggaagaagtctgctccatgagccaacctggtattacacaa 262

                                               
Query: 601 actccaagaacagaacacctcaaggttcaattggaa 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 261 actccaagaacagaacacctcaaggttcaattggaa 226


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no111_a01.g1 MSMg01no111_a01.g1 CHROMAT_FILE:
MSMg01no111_a01.g1 PHD_FILE: MSMg01no111_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:46 2005
         (616 letters)



>mm_chr2_105334085_105335099
          Length = 1015

 Score = 1098 bits (568), Expect = 0.0
 Identities = 604/616 (98%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctagaacactcaacttcttcttccaaaacatcagagccacactaggtgagatttaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ttctagaacactcaacttcttcttccaaaacatcagagccacactaggtgagatt-aaat 259

                                                                       
Query: 61  gcatacgaagtactgagctctaaaccaagtacccatgtctacaaaacctgcaaataaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcatacgaagtactgagctctaaaccaagtacccatgtctacaaaacctgcaaataaaat 319

                                                                       
Query: 121 ttgcattcacatcgtaaaagtgctccctgcaacactcacacctctaccaacttcattttc 180
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 320 ttgcattcacatcgtaaaagtgccccctgcaacactcacacctctaccaacttcatttcc 379

                                                                       
Query: 181 agactgtagagcaagcgaattgttagccaatgtagcctggtcttcacagtgcttgttcag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 agactgtagagcaagcgaattgttagccaatgtagcctggtcttcacagtgcgtgttcag 439

                                                                       
Query: 241 ttagcaggtacagccttcagcgacagtgcaagaaggtattctagaggccatcaataatat 300
           |||||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||
Sbjct: 440 ttagcaggtacagccttcagcggcagtgcaggaaggtagtcaagaggccatcaataatat 499

                                                                       
Query: 301 tcctccaagttcttgtgggggaagcggtaatttgttccctaatatgcaggagtgacttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcctccaagttcttgtgggggaagcggtaatttgttccctaatatgcaggagtgacttat 559

                                                                       
Query: 361 cttcagtggctgagaccctatcagtcttcagaggtggttgtaattaataggtaaggaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcagtggctgagaccctatcagtcttcagaggtggttgtaattaataggtaaggaagt 619

                                                                       
Query: 421 gtaaatacatttgaattaatagagccactaggcgtgactaactataatatgattacctgt 480
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 620 gtaaatacatttgaattaatagagccactaggtgtgactaactataatatgattacatgt 679

                                                                       
Query: 481 caaattaacccagagatcaaacttaatcaatccagactaataactgccaggacaacagtt 540
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaattaacccagagatcaaacctaatcaatccagactaataactgccaggacaacagtt 739

                                                                       
Query: 541 ttgtggccttagctgagtttacctcgaaaggaactaaggaaaatggactcggttaaaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgtggccttagctgagtttacctcgaaaggaactaaggaaaatggactcggttaaaatg 799

                           
Query: 601 taaagcctgtgttttt 616
           ||||||||||||||||
Sbjct: 800 taaagcctgtgttttt 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space:   609030
Effective search space used:   609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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